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The Open Protein Structure Annotation Network
PDB Keyword
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3dma

    Table of contents
    1. 1. Protein Summary
    2. 2. Ligand Summary

    Title Crystal structure of an exopolyphosphatase-related protein from Bacteroides fragilis. NorthEast Structural Genomics target BfR192. To be Published
    Site NESGC
    PDB Id 3dma Target Id
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    Molecular Characteristics
    Source
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    Alias Ids
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    TPS8756,3.90.1640.10, PF01368, PF02272
    Molecular Weight
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    Da.
    Residues
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    Isoelectric Point
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    Sequence
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      BLAST   FFAS

    Structure Determination
    Method XRAY
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    Chains 1
    Resolution (Å)
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    Rfree
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    Matthews' coefficent 3.23 Rfactor 0.223
    Waters
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    Solvent Content 61.90

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    Ligand Information
    Ligands
    Metals

    Jmol

     
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    Google Scholar output for 3dma
    1. Towards more accurate pharmacophore modeling: Multicomplex-based comprehensive pharmacophore map and most-frequent-feature pharmacophore model of
    J Zou, HZ Xie, SY Yang, JJ Chen, JX Ren - Journal of Molecular , 2008 - Elsevier
     
    2. 2', 3'-cAMP hydrolysis by metal-dependent phosphodiesterases containing DHH, EAL, and HD domains is non-specific: Implications for PDE screening
    F Rao, Y Qi, E Murugan, S Pasunooti, Q Ji - Biochemical and biophysical , 2010 - Elsevier
     
    3. Structural and Functional Assays of AtTLP18. 3 Identify Its Novel Acid Phosphatase Activity in Thylakoid Lumen
    HY Wu, MS Liu, TP Lin, YS Cheng - Plant physiology, 2011 - Am Soc Plant Biol
     
    4. Role of RecJ-like protein with 5_-3_ exonuclease activity in oligo (deoxy) nucleotide degradation
    T Wakamatsu, K Kim, Y Uemura, N Nakagawa - Journal of Biological , 2011 - ASBMB
     
    5. Development of resistance against blackleg disease in Brassica oleracea var. botrytis through in silico methods
    M Srivastava, BA Akhoon, SK Gupta - Fungal Genetics and , 2010 - Elsevier
     
    6. Kinetoplastid RNA editing ligases 1 and 2 exhibit different electrostatic properties
    A Shaneh, R Salavati - Journal of Molecular Modeling, 2010 - Springer
     
    7. Multicomplex_Based Pharmacophore Guided 3d_Qsar Studies of N_Substituted 2'_(Aminoaryl) Benzothiazoles as Aurora_a Inhibitors
    G He, M Qiu, R Li, L Ouyang, F Wu - Chemical Biology & , 2012 - Wiley Online Library
     
    8. Integrated structure-based activity prediction model of benzothiadiazines on various genotypes of HCV NS5b polymerase (1a, 1b and 4) and its application in the
    MAH Ismail, DA Abou El Ella, KAM Abouzid - Bioorganic & Medicinal , 2012 - Elsevier
     

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    Protein Summary


    Ligand Summary

    Reviews

    References

     

    No references found.

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