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3dex

    Table of contents
    1. 1. Protein Summary
    2. 2. Ligand Summary

    Title Crystal structure of SAV_2001 protein from Streptomyces avermitilis, Northeast Structural Genomics Consortium Target SvR107. To be Published
    Site NESGC
    PDB Id 3dex Target Id
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    Molecular Characteristics
    Source
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    Alias Ids
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    TPS9181,PF10262, 3.40.30.10
    Molecular Weight
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    Da.
    Residues
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    Isoelectric Point
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    Sequence
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      BLAST   FFAS

    Structure Determination
    Method XRAY
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    Chains 1
    Resolution (Å)
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    Rfree
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    Matthews' coefficent 1.84 Rfactor 0.230
    Waters
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    Solvent Content 33.16

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    Ligand Information
    Ligands
    Metals

    Jmol

     
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    Google Scholar output for 3dex
    1. A machine-learning approach for predicting B-cell epitopes
    ND Rubinstein, I Mayrose, T Pupko - Molecular immunology, 2009 - Elsevier
     
    2. Inducing cross-clade neutralizing antibodies against HIV-1 by immunofocusing
    M Humbert, RA Rasmussen, H Ong, FMP Kaiser - PLoS One, 2008 - dx.plos.org
     
    3. Automated detection of conformational epitopes using phage display peptide sequences
    SS Negi, W Braun - Bioinformatics and biology insights, 2009 - ncbi.nlm.nih.gov
     
    4. MimoDB: a new repository for mimotope data derived from phage display technology
    B Ru, J Huang, P Dai, S Li, Z Xia, H Ding, H Lin - Molecules, 2010 - mdpi.com
     
    5. Characterization of IgE epitopes of Cuc m 2, the major melon allergen, and their role in cross_reactivity with pollen profilins
    L Tordesillas, LF Pacios, A Palacin - Clinical & , 2010 - Wiley Online Library
     
    6. Bioinformatics resources and tools for phage display
    J Huang, B Ru, P Dai - Molecules, 2011 - mdpi.com
     
    7. Epitope prediction based on random peptide library screening: benchmark dataset and prediction tools evaluation
    P Sun, W Chen, Y Huang, H Wang, Z Ma, Y Lv - Molecules, 2011 - mdpi.com
     
    8. MimoPro: a more efficient Web-based tool for epitope prediction using phage display libraries
    WH Chen, PP Sun, Y Lu, WW Guo - BMC , 2011 - biomedcentral.com
     
    9. Immunoinformatics: an integrated scenario
    N Tomar, RK De - Immunology, 2010 - Wiley Online Library
     
    10. Identification of Peptide Mimotopes of Trypanosoma brucei gambiense Variant Surface Glycoproteins
    LC Van Nieuwenhove, S Rog, F Balharbi - PLoS neglected tropical , 2011 - dx.plos.org
     
    11. Information loss and noise inclusion risk in mimotope based epitope mapping
    J Huang, M Xia, H Lin, F Guo - Bioinformatics and Biomedical , 2009 - ieeexplore.ieee.org
     
    12. Design of antibody-reactive peptides from discontinuous parts of scorpion toxins
    L Alvarenga, V Moreau, L Felicori, C Nguyen, C Duarte - Vaccine, 2010 - Elsevier
     
    13. LocaPep: localization of epitopes on protein surfaces using peptides from phage display libraries
    LF Pacios, L Tordesillas, A Palac n - Journal of chemical , 2011 - ACS Publications
     
    14. B cell epitope prediction
    JV Ponomarenko, MHV Van Regenmortel - Structural Bioinformatics, 2009 - sdsc.edu
     
    15. Phage display-directed discovery of LEDGF/p75 binding cyclic peptide inhibitors of HIV replication
    BA Desimmie, M Humbert, E Lescrinier, J Hendrix - Molecular , 2012 - nature.com
     
    16. T-cell Epitopes of Mycobacterium tuberculosis Antigen 85 Complex Potential for Generating Antibody: an Immunoinformatics Study
    Y Simanjuntak - Microbiology Indonesia, 2009 - jurnal.permi.or.id
     
    17. Ranking Beta Sheet Topologies with Applications to Protein Structure Prediction
    R Fonseca, G Helles, P Winter - Journal of Mathematical Modelling and , 2011 - Springer
     
    18. Identification of Mimotopes with Diagnostic Potential for Trypanosoma brucei gambiense Variant Surface Glycoproteins Using Human Antibody Fractions
    L Van Nieuwenhove, P Bscher, F Balharbi - PLoS Neglected , 2012 - dx.plos.org
     
    19. TCP: a tool for designing chimera proteins based on the tertiary structure information
    T Yoneya, R Nishida - BMC bioinformatics, 2009 - biomedcentral.com
     
    20. A New Library of Surface Patches: Design and Applications
    R Gamliel, K Kedem, R Kolodny, C Keasar - 2009 - cs.bgu.ac.il
     
    21. MIMOTOPES OF HIV ENV
    RM Ruprecht, M Humbert - US Patent App. 13/075,761, 2011 - Google Patents
     
    22. Medicinal protein engineering
    YE Khudyakov - 2008 - books.google.com
     
    23. Phages and HIV-1: From Display to Interplay
    S Delhalle, JC Schmit, A Chevign - International Journal of Molecular , 2012 - mdpi.com
     

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    Protein Summary


    Ligand Summary

    Reviews

    References

     

    No references found.

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