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The Open Protein Structure Annotation Network
PDB Keyword
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2idb

    Table of contents
    1. 1. Protein Summary
    2. 2. Ligand Summary

    Title Crystal Structure of 3-octaprenyl-4-hydroxybenzoate decarboxylase (UbiD) from Escherichia coli, Northeast Structural Genomics Target ER459. TO BE PUBLISHED
    Site NESGC
    PDB Id 2idb Target Id
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    Molecular Characteristics
    Source
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    Alias Ids
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    TPS8852,3.40.1670.10, 1.20.5.570, PF01977
    Molecular Weight
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    Da.
    Residues
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    Isoelectric Point
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    Sequence
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      BLAST   FFAS

    Structure Determination
    Method XRAY
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    Chains 3
    Resolution (Å)
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    Rfree
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    Matthews' coefficent 2.91 Rfactor 0.201
    Waters
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    Solvent Content 57.69

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    Ligand Information
    Ligands 1PE (PENTAETHYLENE) x 3;EDO (1,2-ETHANEDIOL) x 3
    Metals

    Jmol

     
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    Google Scholar output for 2idb
    1. PSI-2: structural genomics to cover protein domain family space
    BH Dessailly, R Nair, L Jaroszewski, JE Fajardo - Structure, 2009 - Elsevier
     
    2. Cradle-loop barrels and the concept of metafolds in protein classification by natural descent
    V Alva, KK Koretke, M Coles, AN Lupas - Current opinion in structural , 2008 - Elsevier
     
    3. Domain definition and target classification for CASP7
    ND Clarke, I Ezkurdia, J Kopp, RJ Read - Proteins: Structure, , 2007 - Wiley Online Library
     
    4. BuildBetaA system for automatically constructing beta sheets
    N Max, CC Hu, O Kreylos - : Structure, Function, and , 2010 - Wiley Online Library
     
    5. OPUS-Dom: Applying the Folding-Based Method VECFOLD to Determine Protein Domain Boundaries
    Y Wu, AD Dousis, M Chen, J Li, J Ma - Journal of molecular biology, 2009 - Elsevier
     
    6. BCL:: ContactLow Confidence Fold Recognition Hits Boost Protein Contact Prediction and De Novo Structure Determination
    M Karaka_, N Woetzel, J Meiler - Journal of Computational , 2010 - online.liebertpub.com
     
    7. The Fragment-based Consistency Score in Model Quality Assessment for De Novo Prediction of Protein Structures
    H Cetin, TN Sasaki, M Sasai - Chem-Bio Informatics Journal, 2011 - J-STAGE
     
    8. ___________________________________
    H Cetin_ _____ ____ - CBI _____, 2011 - J-STAGE
     

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    Protein Summary


    Ligand Summary

    Reviews

    References

     

    No references found.

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