The Open Protein Structure Annotation Network
PDB Keyword


    Table of contents
    1. 1. Protein Summary
    2. 2. Ligand Summary

    Title Crystal structures of catalytic complexes of the oxidative DNA/RNA repair enzyme AlkB. Nature 439 879-884 2006
    Site NESGC
    PDB Id 2fdi Target Id ER126
    Related PDB Ids 2fdk 2fdj 2fdh 2fdg 2fd8 2fdf 
    Molecular Characteristics
    Source Escherichia coli
    Alias Ids TPS8823,, BIG_205 Molecular Weight 24074.24 Da.
    Residues 216 Isoelectric Point 7.73
    Sequence mldlfadaepwqeplaagavilrrfafnaaeqlirdindvasqspfrqmvtpggytmsvamtncghlgw tthrqgylyspidpqtnkpwpampqsfhnlcqraataagypdfqpdaclinryapgaklslhqdkdepd lrapivsvslglpaifqfgglkrndplkrlllehgdvvvwggesrlfyhgiqplkagfhpltidcrynl tfrqagkke
      BLAST   FFAS

    Structure Determination
    Method XRAY Chains 1
    Resolution (Å) 1.80 Rfree 0.226
    Matthews' coefficent 1.99 Rfactor 0.195
    Waters 105 Solvent Content 38.09

    Ligand Information
    Ligands AKG-SIN (2-OXYGLUTARIC) x 1
    Metals FE2 (FE) x 1


    Google Scholar output for 2fdi
    1. The FTO (fat mass and obesity associated) gene codes for a novel member of the non-heme dioxygenase superfamily
    L Sanchez-Pulido, M Andrade-Navarro - BMC biochemistry, 2007 - biomedcentral.com
    2. Homology modeling and function prediction of hABH1, involving in repair of alkylation damaged DNA
    S Das, AS Vidyarthi - Interdisciplinary Sciences: Computational Life , 2011 - Springer

    Protein Summary

    Ligand Summary




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