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The Open Protein Structure Annotation Network
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1ns5

    Table of contents
    1. 1. Protein Summary
    2. 2. Ligand Summary

    Title Structure of YBEA from E. coli. To be Published
    Site NESGC
    PDB Id 1ns5 Target Id
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    Molecular Characteristics
    Source
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    Alias Ids
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    TPS8851,PF02590, 3.40.1280.10
    Molecular Weight
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    Da.
    Residues
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    Isoelectric Point
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    Sequence
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      BLAST   FFAS

    Structure Determination
    Method XRAY
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    Chains 2
    Resolution (Å)
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    Rfree
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    Matthews' coefficent 1.86 Rfactor 0.145
    Waters
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    Solvent Content 33.44

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    Ligand Information
    Ligands
    Metals

    Jmol

     
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    Google Scholar output for 1ns5
    1. Intricate knots in proteins: Function and evolution
    P Virnau, LA Mirny, M Kardar - PLoS computational biology, 2006 - dx.plos.org
     
    2. Structural analysis of a set of proteins resulting from a bacterial genomics project
    J Badger, JM Sauder, JM Adams - Proteins: Structure, , 2005 - Wiley Online Library
     
    3. Structure and Function of the Antibiotic Resistance-mediating Methyltransferase AviRb from Streptomyces viridochromogenes
    TG Mosbacher, A Bechthold, GE Schulz - Journal of molecular biology, 2005 - Elsevier
     
    4. Database searching by flexible protein structure alignment
    Y Ye, A Godzik - Protein science, 2004 - Wiley Online Library
     
    5. PDB
    M Von Grotthuss, D Plewczynski, K Ginalski - BMC , 2006 - biomedcentral.com
     
    6. Identification of pseudouridine methyltransferase in Escherichia coli
    R Ero, L Peil, A Liiv, J Remme - Rna, 2008 - rnajournal.cshlp.org
     
    7. YbeA is the m3_ methyltransferase RlmH that targets nucleotide 1915 in 23S rRNA
    E Purta, KH Kaminska, JM Kasprzak, JM Bujnicki - RNA, 2008 - rnajournal.cshlp.org
     
    8. Rapid knot detection and application to protein structure prediction
    F Khatib, MT Weirauch, CA Rohl - Bioinformatics, 2006 - Oxford Univ Press
     
    9. How does a knotted protein fold?
    AL Mallam - FEBS Journal, 2009 - Wiley Online Library
     
    10. Experimental detection of knotted conformations in denatured proteins
    AL Mallam, JM Rogers - Proceedings of the , 2010 - National Acad Sciences
     
    11. Structures and folding pathways of topologically knotted proteins
    P Virnau, A Mallam, S Jackson - Journal of Physics: Condensed , 2011 - iopscience.iop.org
     
    12. 3D-Fun: predicting enzyme function from structure
    M Von Grotthuss, D Plewczynski, G Vriend - Nucleic Acids , 2008 - Oxford Univ Press
     
    13. What lessons can be learned from studying the folding of homologous proteins?
    AA Nickson, J Clarke - Methods, 2010 - Elsevier
     
    14. Structural statistical properties of knotted proteins
    W Xiang-Hong, S Yu, Z Lin-Xi - Chinese Physics B, 2009 - iopscience.iop.org
     
    15. Folds and functions of domains in RNA modification enzymes
    A Czerwoniec, JM Kasprzak - DNA and RNA , 2009 - asia.genesilico.pl
     
    16. Knot formation in newly translated proteins is spontaneous and accelerated by chaperonins
    AL Mallam, SE Jackson - Nature Chemical Biology, 2011 - nature.com
     
    17. 1 Protein methyltransferases: Their distribution among the five structural classes of adomet-dependent methyltransferases
    HL Schubert, RM Blumenthal, X Cheng - The Enzymes, 2006 - Elsevier
     
    18. Computational and experimental investigations of forces in protein folding
    DA Schell - 2003 - txspace.di.tamu.edu
     
    19. Spectral markers for knotted core of proteins
    P Lissy Anto, AS Nair - CIB'2009, 2009 - cls.zju.edu.cn
     
    20. The Conformational Relationship between Knotted Proteins and Corresponding mRNA Templates
    RH Hung - 2007 - etdncku.lib.ncku.edu.tw
     
    21. Protein Structure Database for Structural Genomics Group
    JY Lau - 2005 - www-nmr.cabm.rutgers.edu
     

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    Protein Summary


    Ligand Summary

    Reviews

    References

     

    No references found.

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