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The Open Protein Structure Annotation Network
PDB Keyword
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1npd

    Table of contents
    1. 1. Protein Summary
    2. 2. Ligand Summary

    Title The 2.3-A crystal structure of the shikimate 5-dehydrogenase orthologue YdiB from Escherichia coli suggests a novel catalytic environment for an NAD-dependent dehydrogenase. J.Biol.Chem. 278 19176-19182 2003
    Site NESGC
    PDB Id 1npd Target Id
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    Molecular Characteristics
    Source
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    Alias Ids
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    TPS8837,3.40.192.10, PF08501, PF01488, 3.40.50.720
    Molecular Weight
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    Da.
    Residues
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    Isoelectric Point
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    Sequence
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      BLAST   FFAS

    Structure Determination
    Method XRAY
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    Chains 2
    Resolution (Å)
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    Rfree
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    Matthews' coefficent 2.12 Rfactor 0.217
    Waters
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    Solvent Content 41.51

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    Ligand Information
    Ligands NAD (NICOTINAMIDE-ADENINE-DINUCLEOTIDE) x 2
    Metals

    Jmol

     
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    Google Scholar output for 1npd
    1. Progress of structural genomics initiatives: an analysis of solved target structures
    AE Todd, RL Marsden, JM Thornton - Journal of molecular , 2005 - Elsevier
     
    2. Statistical analysis and prediction of proteinprotein interfaces
    AJ Bordner, R Abagyan - Proteins: Structure, Function, and , 2005 - Wiley Online Library
     
    3. Structural genomics of highly conserved microbial genes of unknown function in search of new antibacterial targets
    C Abergel, B Coutard, D Byrne, S Chenivesse - Journal of structural and , 2003 - Springer
     
    4. Site-directed mutagenesis of the active site region in the quinate/shikimate 5-dehydrogenase YdiB of Escherichia coli
    HA Lindner, G Nadeau, A Matte, G Michel - Journal of Biological , 2005 - ASBMB
     
    5. Continuous optimization methods for structure alignments
    R Andreani, JM Martnez, L Martnez, F Yano - Mathematical Programming, 2008 - Springer
     
    6. Crystal structures of shikimate dehydrogenase AroE from Thermus thermophilus HB8 and its cofactor and substrate complexes: insights into the enzymatic mechanism
    B Bagautdinov, N Kunishima - Journal of molecular biology, 2007 - Elsevier
     
    7. Structural and biochemical analyses of shikimate dehydrogenase AroE from Aquifex aeolicus: implications for the catalytic mechanism
    J Gan, Y Wu, P Prabakaran, Y Gu, Y Li - Biochemistry, 2007 - ACS Publications
     
    8. A fold-recognition approach to loop modeling
    C Levefelt, D Lundh - Journal of molecular modeling, 2006 - Springer
     
    9. A new approach to assess and predict the functional roles of proteins across all known structures
    ES Julfayev, RJ McLaughlin, YP Tao - Journal of structural and , 2011 - Springer
     
    10. Studies on the inference of protein binding regions across fold space based on structural similarities
    J Teyra, J Hawkins, H Zhu - : Structure, Function, and , 2011 - Wiley Online Library
     
    11. Protein Structure Database for Structural Genomics Group
    JY Lau - 2005 - www-nmr.cabm.rutgers.edu
     

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    Protein Summary


    Ligand Summary

    Reviews

    References

     

    No references found.

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