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1ef4

    Table of contents
    1. 1. Protein Summary
    2. 2. Ligand Summary

    Title Zinc-bundle structure of the essential RNA polymerase subunit RPB10 from Methanobacterium thermoautotrophicum. Proc.Natl.Acad.Sci.USA 97 6316-6321 2000
    Site NESGC
    PDB Id 1ef4 Target Id
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    Molecular Characteristics
    Source
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    Alias Ids
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    TPS9194,4571, 1.10.10.60, PF01194
    Molecular Weight
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    Da.
    Residues
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    Isoelectric Point
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    Sequence
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      BLAST   FFAS

    Structure Determination
    Method NMR
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    Chains 1

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    Ligand Information
    Ligands
    Metals ZN (ZINC) x 1

    Jmol

     
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    Google Scholar output for 1ef4
    1. Zinc finger proteins: new insights into structural and functional diversity
    JH Laity, BM Lee, PE Wright - Current opinion in structural biology, 2001 - Elsevier
     
    2. Structural classification of zinc fingers
    SS Krishna, I Majumdar, NV Grishin - Nucleic Acids Research, 2003 - Oxford Univ Press
     
    3. Structural proteomics of an archaeon
    D Christendat, A Yee, A Dharamsi, Y Kluger - nature structural , 2000 - pdg.cnb.uam.es
     
    4. Structural proteomics: toward high-throughput structural biology as a tool in functional genomics
    A Yee, K Pardee, D Christendat - Accounts of chemical , 2003 - ACS Publications
     
    5. Application of the PM6 method to modeling proteins
    JJP Stewart - Journal of molecular modeling, 2009 - Springer
     
    6. Anatomy of an amyloidogenic intermediate: conversion of _-sheet to _-sheet structure in transthyretin at acidic pH
    RS Armen, DOV Alonso, V Daggett - Structure, 2004 - Elsevier
     
    7. Zinc-bundle structure of the essential RNA polymerase subunit RPB10 from Methanobacterium thermoautotrophicum
    CD Mackereth, CH Arrowsmith - Proceedings of the , 2000 - National Acad Sciences
     
    8. Structure and function of RNA polymerase II
    P Cramer - Advances in protein chemistry, 2004 - Elsevier
     
    9. Evolution of binding sites for zinc and calcium ions playing structural roles
    JW Torrance, MW MacArthur - : Structure, Function, and , 2008 - Wiley Online Library
     
    10. Novel approach for __helical topology prediction in globular proteins: Generation of interhelical restraints
    SR McAllister, BE Mickus, JL Klepeis - Proteins: Structure, , 2006 - Wiley Online Library
     
    11. SCUD: Fast structure clustering of decoys using reference state to remove overall rotation
    H Li, Y Zhou - Journal of computational chemistry, 2005 - Wiley Online Library
     
    12. SURVEY AND SUMMARY: Structural classification of zinc fingers
    SS Krishna, I Majumdar, NV Grishin - Nucleic acids research, 2003 - ncbi.nlm.nih.gov
     
    13. Fold helical proteins by energy minimization in dihedral space and a DFIRE-based statistical energy function
    H Li, Y Zhou - Journal of Bioinformatics and , 2005 - sparks.informatics.iupui.edu
     
    14. Prediction of structures of zinc_binding proteins through explicit modeling of metal coordination geometry
    C Wang, R Vernon, O Lange, M Tyka - Protein , 2010 - Wiley Online Library
     
    15. Zinc enzymes
    DS Auld - Encyclopedia of Inorganic and Bioinorganic , 2006 - Wiley Online Library
     
    16. A model of local_minima distribution on conformational space and its application to protein structure prediction
    H Li - Proteins: Structure, Function, and Bioinformatics, 2006 - Wiley Online Library
     
    17. Zinc_finger Genes
    RP Grant, M Crossley, JP Mackay - eLS, 2007 - Wiley Online Library
     
    18. Dimensionality reduction in computational demarcation of protein tertiary structures
    RR Joshi, PR Panigrahi, RN Patil - Journal of Molecular Modeling, 2011 - Springer
     
    19. Isolation and characterisation of the intermembrane space components of the mitochondrial TIM22 protein import machinery of Neurospora crassa
    A Vasiljev - 2004 - edoc.ub.uni-muenchen.de
     
    20. Protein Structure Database for Structural Genomics Group
    JY Lau - 2005 - www-nmr.cabm.rutgers.edu
     
    21. A Low-Memory-Requiring and Fast Approach to Cluster Large-Scale Decoy Protein Structures
    YC Yuan, Y Shang, H Li - Open Journal of Biophysics, 2012 - scirp.org
     
    22. A new computationally facile analytical approximation of electrostatic potential suitable for macromolecules.
    JC Gordon - 2007 - scholar.lib.vt.edu
     

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    Protein Summary


    Ligand Summary

    Reviews

    References

     

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