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The Open Protein Structure Annotation Network
PDB Keyword
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2paq

    Table of contents
    1. 1. Protein Summary
    2. 2. Ligand Summary

    Title Structural insight into the mechanism of substrate specificity and catalytic activity of an HD-domain phosphohydrolase: the 5'-deoxyribonucleotidase YfbR from Escherichia coli. J.Mol.Biol. 378 215-226 2008
    Site MCSG
    PDB Id 2paq Target Id
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    Molecular Characteristics
    Source
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    Alias Ids
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    TPS5185,AAC75351, 562
    Molecular Weight
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    Da.
    Residues
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    Isoelectric Point
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    Sequence
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      BLAST   FFAS

    Structure Determination
    Method XRAY
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    Chains 2
    Resolution (Å)
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    Rfree
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    Matthews' coefficent 2.24 Rfactor 0.187
    Waters
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    Solvent Content 45.09

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    Ligand Information
    Ligands
    Metals

    Jmol

     
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    Google Scholar output for 2paq
    1. Structural insight into the mechanism of substrate specificity and catalytic activity of an HD-domain phosphohydrolase: the 5'-deoxyribonucleotidase YfbR from
    MD Zimmerman, M Proudfoot, A Yakunin - Journal of molecular , 2008 - Elsevier
     
    2. A metazoan ortholog of SpoT hydrolyzes ppGpp and functions in starvation responses
    D Sun, G Lee, JH Lee, HY Kim, HW Rhee - Nature structural & , 2010 - nature.com
     
    3. Structure and activity of the Cas3 HD nuclease MJ0384, an effector enzyme of the CRISPR interference
    N Beloglazova, P Petit, R Flick, G Brown - The EMBO , 2011 - nature.com
     
    4. The Structure of an Unconventional HD-GYP Protein from Bdellovibrio Reveals the Roles of Conserved Residues in this Class of Cyclic-di-GMP Phosphodiesterases
    AL Lovering, MJ Capeness, C Lambert, L Hobley - mBio, 2011 - Am Soc Microbiol
     
    5. VV prasanth & S. Chitti: Predicting the function of a hypothetical protein from Pyrococcus horikoshii OT3 as HD domain containing metal-dependent
    PA Babu, K Harshita - The Internet Journal of Genomics and Proteomics, 2010 - ispub.com
     

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    Protein Summary


    Ligand Summary

    Reviews

    References

     

    No references found.

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