.
The Open Protein Structure Annotation Network
PDB Keyword
.

3rf7

    Table of contents
        1. 1.1.1. Protein Summary
    1. 2. Summary
        1. 2.1.1. Ligand Summary

    Title Crystal structure of an Iron-containing alcohol dehydrogenase (Sden_2133) from Shewanella denitrificans OS-217 at 2.12 A resolution. To be published
    Site JCSG
    PDB Id 3rf7 Target Id
    reference to undefined name 'note' Exception of type 'MindTouch.Deki.Script.Runtime.DekiScriptUndefinedNameException' was thrown. (click for details)
    Molecular Characteristics
    Source
    reference to undefined name 'note' Exception of type 'MindTouch.Deki.Script.Runtime.DekiScriptUndefinedNameException' was thrown. (click for details)
    reference to undefined name 'note' Exception of type 'MindTouch.Deki.Script.Runtime.DekiScriptUndefinedNameException' was thrown. (click for details)
    Alias Ids
    reference to undefined name 'note' Exception of type 'MindTouch.Deki.Script.Runtime.DekiScriptUndefinedNameException' was thrown. (click for details)
    reference to undefined name 'note' Exception of type 'MindTouch.Deki.Script.Runtime.DekiScriptUndefinedNameException' was thrown. (click for details)
    reference to undefined name 'note' Exception of type 'MindTouch.Deki.Script.Runtime.DekiScriptUndefinedNameException' was thrown. (click for details)
    TPS27823,YP_563138.1, _0108.0002956_, 326287
    Molecular Weight
    reference to undefined name 'note' Exception of type 'MindTouch.Deki.Script.Runtime.DekiScriptUndefinedNameException' was thrown. (click for details)
    Da.
    Residues
    reference to undefined name 'note' Exception of type 'MindTouch.Deki.Script.Runtime.DekiScriptUndefinedNameException' was thrown. (click for details)
    Isoelectric Point
    reference to undefined name 'note' Exception of type 'MindTouch.Deki.Script.Runtime.DekiScriptUndefinedNameException' was thrown. (click for details)
    Sequence
    reference to undefined name 'note' Exception of type 'MindTouch.Deki.Script.Runtime.DekiScriptUndefinedNameException' was thrown. (click for details)
      BLAST   FFAS

    Structure Determination
    Method XRAY
    reference to undefined name 'note' Exception of type 'MindTouch.Deki.Script.Runtime.DekiScriptUndefinedNameException' was thrown. (click for details)
    Chains 1
    Resolution (Å)
    reference to undefined name 'note' Exception of type 'MindTouch.Deki.Script.Runtime.DekiScriptUndefinedNameException' was thrown. (click for details)
    Rfree
    reference to undefined name 'note' Exception of type 'MindTouch.Deki.Script.Runtime.DekiScriptUndefinedNameException' was thrown. (click for details)
    Matthews' coefficent Rfactor 0.1819
    Waters
    reference to undefined name 'note' Exception of type 'MindTouch.Deki.Script.Runtime.DekiScriptUndefinedNameException' was thrown. (click for details)
    Solvent Content

    reference to undefined name 'note' Exception of type 'MindTouch.Deki.Script.Runtime.DekiScriptUndefinedNameException' was thrown. (click for details)

    Ligand Information
    Ligands
    Metals

    Jmol

     
    parameter 'target' could not convert from 'list' to 'str' (click for details)
    Google Scholar output for 3rf7

    reference to undefined name 'note' Exception of type 'MindTouch.Deki.Script.Runtime.DekiScriptUndefinedNameException' was thrown. (click for details)

    reference to undefined name 'note' Exception of type 'MindTouch.Deki.Script.Runtime.DekiScriptUndefinedNameException' was thrown. (click for details)

    Protein Summary

    Pfam update: Fe-ADH (PF00465) family

    394060 from SHEWANELLA DENITRIFICANS OS-217 encodes a protein which belongs to Pfam; PF00465; Fe-ADH. Crystal structure of 394060 contains one protomer in asu, however biological molecule is a dimer.monomer_MH.png

    Fig. 1 One protomer found in the asu.   394060 is color-coded from blue (N-terminal) to red (C-terminal). NAD is shown as stick.

     

    dimer_MH.png

    Fig. 2 Dimer of  394060

    Summary

        No:  Chain   Z    rmsd lali nres  %id PDB  Description
    1: 1rrm-A 40.8 2.3 336 385 19 PDB MOLECULE: LACTALDEHYDE REDUCTASE; 2: 1rrm-B 40.8 2.3 336 384 19 PDB MOLECULE: LACTALDEHYDE REDUCTASE; 3: 2bl4-B 40.5 2.4 337 382 18 PDB MOLECULE: LACTALDEHYDE REDUCTASE; 4: 2bi4-B 40.4 2.4 337 382 18 PDB MOLECULE: LACTALDEHYDE REDUCTASE; 5: 3bfj-S 40.4 2.4 336 382 18 PDB MOLECULE: 1,3-PROPANEDIOL OXIDOREDUCTASE; 6: 2bl4-A 40.3 2.4 337 382 18 PDB MOLECULE: LACTALDEHYDE REDUCTASE; 7: 2bi4-A 40.3 2.4 336 382 18 PDB MOLECULE: LACTALDEHYDE REDUCTASE; 8: 3bfj-H 40.0 2.5 336 382 18 PDB MOLECULE: 1,3-PROPANEDIOL OXIDOREDUCTASE; 9: 3bfj-C 39.7 2.5 336 382 18 PDB MOLECULE: 1,3-PROPANEDIOL OXIDOREDUCTASE; 10: 3bfj-A 39.6 2.5 337 382 18 PDB MOLECULE: 1,3-PROPANEDIOL OXIDOREDUCTASE; 11: 3bfj-P 39.6 2.5 337 382 18 PDB MOLECULE: 1,3-PROPANEDIOL OXIDOREDUCTASE; 12: 3bfj-B 39.5 2.6 336 382 18 PDB MOLECULE: 1,3-PROPANEDIOL OXIDOREDUCTASE; 13: 3bfj-E 39.5 2.5 336 382 18 PDB MOLECULE: 1,3-PROPANEDIOL OXIDOREDUCTASE; 14: 3bfj-Q 39.4 2.6 336 382 18 PDB MOLECULE: 1,3-PROPANEDIOL OXIDOREDUCTASE; 15: 3bfj-F 39.4 2.6 336 382 18 PDB MOLECULE: 1,3-PROPANEDIOL OXIDOREDUCTASE; 16: 3bfj-G 39.4 2.6 337 382 18 PDB MOLECULE: 1,3-PROPANEDIOL OXIDOREDUCTASE; 17: 3bfj-R 39.4 2.6 336 382 18 PDB MOLECULE: 1,3-PROPANEDIOL OXIDOREDUCTASE; 18: 3bfj-J 39.4 2.5 336 382 18 PDB MOLECULE: 1,3-PROPANEDIOL OXIDOREDUCTASE; 19: 3bfj-O 39.3 2.6 336 382 18 PDB MOLECULE: 1,3-PROPANEDIOL OXIDOREDUCTASE; 20: 3bfj-I 39.3 2.6 336 382 18 PDB MOLECULE: 1,3-PROPANEDIOL OXIDOREDUCTASE; 21: 3bfj-N 39.3 2.5 336 382 18 PDB MOLECULE: 1,3-PROPANEDIOL OXIDOREDUCTASE; 22: 3bfj-K 39.2 2.6 337 382 18 PDB MOLECULE: 1,3-PROPANEDIOL OXIDOREDUCTASE; 23: 3bfj-D 39.2 2.6 336 382 18 PDB MOLECULE: 1,3-PROPANEDIOL OXIDOREDUCTASE; 24: 3bfj-M 39.2 2.6 336 382 18 PDB MOLECULE: 1,3-PROPANEDIOL OXIDOREDUCTASE; 25: 3bfj-L 39.1 2.6 336 382 18 PDB MOLECULE: 1,3-PROPANEDIOL OXIDOREDUCTASE; 26: 3bfj-T 39.0 2.6 338 382 18 PDB MOLECULE: 1,3-PROPANEDIOL OXIDOREDUCTASE; 27: 1o2d-A 37.1 2.8 330 358 20 PDB MOLECULE: ALCOHOL DEHYDROGENASE, IRON-CONTAINING; 28: 1vhd-A 37.0 2.8 331 361 20 PDB MOLECULE: ALCOHOL DEHYDROGENASE, IRON-CONTAINING; 29: 1o2d-B 36.9 2.9 332 360 20 PDB MOLECULE: ALCOHOL DEHYDROGENASE, IRON-CONTAINING; 30: 1vhd-B 36.6 2.8 329 361 21 PDB MOLECULE: ALCOHOL DEHYDROGENASE, IRON-CONTAINING; 31: 1vlj-A 34.5 2.9 333 398 20 PDB MOLECULE: NADH-DEPENDENT BUTANOL DEHYDROGENASE; 32: 1vlj-B 34.4 2.9 333 400 20 PDB MOLECULE: NADH-DEPENDENT BUTANOL DEHYDROGENASE; 33: 1oj7-A 33.9 2.8 327 390 17 PDB MOLECULE: HYPOTHETICAL OXIDOREDUCTASE YQHD; 34: 1oj7-B 33.9 2.7 328 390 17 PDB MOLECULE: HYPOTHETICAL OXIDOREDUCTASE YQHD; 35: 3jzd-A 33.8 2.9 314 354 17 PDB MOLECULE: IRON-CONTAINING ALCOHOL DEHYDROGENASE; 36: 1oj7-D 33.8 2.8 329 390 17 PDB MOLECULE: HYPOTHETICAL OXIDOREDUCTASE YQHD; 37: 3jzd-D 33.8 2.9 315 354 17 PDB MOLECULE: IRON-CONTAINING ALCOHOL DEHYDROGENASE; 38: 3iv7-A 33.6 2.9 314 356 21 PDB MOLECULE: ALCOHOL DEHYDROGENASE IV; 39: 3jzd-C 33.5 2.9 315 354 17 PDB MOLECULE: IRON-CONTAINING ALCOHOL DEHYDROGENASE; 40: 3jzd-B 33.4 2.8 312 354 17 PDB MOLECULE: IRON-CONTAINING ALCOHOL DEHYDROGENASE; 41: 3hl0-A 33.1 3.1 315 351 16 PDB MOLECULE: MALEYLACETATE REDUCTASE; 42: 3iv7-B 32.8 3.1 314 356 21 PDB MOLECULE: ALCOHOL DEHYDROGENASE IV; 43: 3hl0-B 31.2 3.2 312 350 16 PDB MOLECULE: MALEYLACETATE REDUCTASE; 44: 1jq5-A 30.8 3.1 317 366 20 PDB MOLECULE: GLYCEROL DEHYDROGENASE; 45: 1kq3-A 29.0 3.7 318 364 20 PDB MOLECULE: GLYCEROL DEHYDROGENASE; 46: 1jpu-A 29.0 3.3 313 361 19 PDB MOLECULE: GLYCEROL DEHYDROGENASE; 47: 1jqa-A 28.8 3.3 314 361 19 PDB MOLECULE: GLYCEROL DEHYDROGENASE; 48: 1ta9-B 28.4 3.5 316 394 17 PDB MOLECULE: GLYCEROL DEHYDROGENASE; 49: 1ta9-A 28.1 3.5 313 389 17 PDB MOLECULE: GLYCEROL DEHYDROGENASE; 50: 1oj7-C 28.1 3.4 326 390 17 PDB MOLECULE: HYPOTHETICAL OXIDOREDUCTASE YQHD; 51: 3ce9-A 26.8 3.5 299 349 14 PDB MOLECULE: GLYCEROL DEHYDROGENASE; 52: 3ce9-D 26.8 3.7 306 349 16 PDB MOLECULE: GLYCEROL DEHYDROGENASE; 53: 3ce9-B 26.7 3.7 306 348 16 PDB MOLECULE: GLYCEROL DEHYDROGENASE; 54: 3ce9-C 26.6 3.6 305 349 16 PDB MOLECULE: GLYCEROL DEHYDROGENASE; 55: 1xag-A 24.4 3.1 293 353 14 PDB MOLECULE: 3-DEHYDROQUINATE SYNTHASE; 56: 1dqs-B 24.2 3.1 290 380 13 PDB MOLECULE: PROTEIN (3-DEHYDROQUINATE SYNTHASE); 57: 1dqs-A 24.1 3.2 294 381 13 PDB MOLECULE: PROTEIN (3-DEHYDROQUINATE SYNTHASE); 58: 1nvf-B 24.0 3.1 292 387 13 PDB MOLECULE: 3-DEHYDROQUINATE SYNTHASE; 59: 1nr5-B 23.9 3.2 291 390 13 PDB MOLECULE: 3-DEHYDROQUINATE SYNTHASE; 60: 1nvf-A 23.9 3.2 292 387 13 PDB MOLECULE: 3-DEHYDROQUINATE SYNTHASE;

    Ligand Summary

    Reviews

    References

     

    No references found.

    Tag page
    • No tags

    Files (2)

    FileSizeDateAttached by 
     dimer_MH.png
    No description
    319.62 kB03:01, 19 Jan 2010gyewonActions
     monomer_MH.png
    No description
    289.96 kB03:01, 19 Jan 2010gyewonActions
    You must login to post a comment.
    All content on this site is licensed under a Creative Commons Attribution 3.0 License
    Powered by MindTouch