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3oqq

    Table of contents
    1. 1. Protein Summary
    2. 2. Ligand Summary

    Title Crystal structure of a Putative lipoprotein (BACOVA_00967) from Bacteroides ovatus at 2.08 A resolution. To be published
    Site JCSG
    PDB Id 3oqq Target Id
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    Molecular Characteristics
    Source
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    Alias Ids
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    TPS47437,ZP_02064008.1, 332527
    Molecular Weight
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    Da.
    Residues
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    Isoelectric Point
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    Sequence
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      BLAST   FFAS

    Structure Determination
    Method XRAY
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    Chains 1
    Resolution (Å)
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    Rfree
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    Matthews' coefficent 2.48 Rfactor 0.1610
    Waters
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    Solvent Content 50.50

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    Ligand Information
    Ligands
    Metals

    Jmol

     
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    Google Scholar output for 3oqq

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    Protein Summary

    cell surface protein, close homologs mostly in Bacteriodes. It is partially [residues 37-261] similar to LruC of Leptospira interrogans serovar Pomona, LruC is one of immunoreactive leptospiral proteins.

     

    Fig. 1 monomer

    sp16575d.png

    Fig. 2 mapping of conserved residues

     

    sp16575d-cons.png

     

    From pfam:

    This sequence hits one of our Pfam-Bs and so will be built as a DUF to start with. There are no other structures, so this might well be interesting.


    Update: I have built this and it overlaps with glycosyl-hydrolase_44, PF12891. So, I will close this ticket. This sequence hits one of our Pfam-Bs and so will be built as a DUF to start with. There are no other structures, so this might well be interesting.

    Ligand Summary

    Reviews

    References

     

    No references found.

    Tag page
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    Files (3)

    FileSizeDateAttached by 
     aline.png
    sp16575d seq alignment
    1223.16 kB17:53, 8 Sep 2010qxuActions
     sp16575d-cons.png
    mapping of conserved residues
    560.04 kB17:51, 8 Sep 2010qxuActions
     sp16575d.png
    sp16575d monomer
    276.08 kB17:39, 8 Sep 2010qxuActions
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