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The Open Protein Structure Annotation Network
PDB Keyword
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3op6

    Table of contents
    1. 1. Protein Summary
    2. 2. Ligand Summary

    Title Crystal structure of an oligo-nucleotide binding protein (lpg1207) from Legionella pneumophila subsp. pneumophila str. philadelphia 1 at 2.00 A resolution. To be published
    Site JCSG
    PDB Id 3op6 Target Id
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    Molecular Characteristics
    Source
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    Alias Ids
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    TPS31006,YP_095238.1, _0014.003584_, 322338
    Molecular Weight
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    Da.
    Residues
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    Isoelectric Point
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    Sequence
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      BLAST   FFAS

    Structure Determination
    Method XRAY
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    Chains 2
    Resolution (Å)
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    Rfree
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    Matthews' coefficent 2.18 Rfactor 0.1951
    Waters
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    Solvent Content 43.68

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    Ligand Information
    Ligands
    Metals

    Jmol

     
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    Google Scholar output for 3op6

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    Protein Summary

    Pfam update: This protein matches the Pfam entry Ybak (PF04073)

    This protein is present as a dimer in the crystal structure. Analytical SEC supports the assignment of a dimer as the significant oligomeric form in solution:

    Fig1.png

    FFAS (link above) indicates strong similarities cysteinyl-tRNA(Pro) deacylase, trans-editing enzyme and YbaK protein wth PDB ids 1dbu, 2cx5 and 3dxa. The JCSG has also solved 2 similar structures (only ~15% sequence identity to this target) with PDB ids 1vjf and 1vki.

    All the above structures have been solved by structural genomics centers.

    Ligand Summary

    Reviews

    References

     

    No references found.

    Tag page
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    378.72 kB23:12, 20 Jul 2010debanuActions
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