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The Open Protein Structure Annotation Network
PDB Keyword
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3nrb

    Table of contents
    1. 1. Protein Summary
    2. 2. Ligand Summary

    Title Crystal structure of a formyltetrahydrofolate deformylase (purU, PP_1943) from PSEUDOMONAS PUTIDA KT2440 at 2.05 A resolution. To be published
    Site JCSG
    PDB Id 3nrb Target Id
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    Molecular Characteristics
    Source
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    Alias Ids
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    TPS29654,NP_744095.1, _0004.004077_, 332387
    Molecular Weight
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    Da.
    Residues
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    Isoelectric Point
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    Sequence
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      BLAST   FFAS

    Structure Determination
    Method XRAY
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    Chains 4
    Resolution (Å)
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    Rfree
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    Matthews' coefficent 2.43 Rfactor 0.184
    Waters
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    Solvent Content 49.38

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    Ligand Information
    Ligands
    Metals

    Jmol

     
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    Google Scholar output for 3nrb
    1. Crystal structure of tandem ACT domain_containing protein ACTP from Galdieria sulphuraria
    E Bitto, DJ Kim, CA Bingman, HJ Kim - Proteins: Structure, , 2012 - Wiley Online Library
     

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    Protein Summary

    Pfam: this target matchs both  ACT and Formyl_trans_N families in Pfam.

    Gene NP_744095 from Pseudomonas putida kt2440 encodes a protein with 286 residues.  In the each asymmetric unit cell, four subunits forms a tetramer as the biolomolecule suggested by PISA.  Analytical size exclusion chromatography also indicates a tetramer is a significantoligomerization state.  Sequence alignment for NCI Blast indicates that the N-terminal domain belongs to the  N-terminal ACT domain of formyltetrahydrofolate deformylase and the C-terminal domain belongs to the Formyl_trans_N super-family.   Dali and SSM also suggests this protein be a structural homolog to Phosphoribosylglycinamide formyltransferase and GLYCINAMIDE RIBONUCLEOTIDE TRANSFORMYLASE, respectively.

     

     

    398622_2.png

    Fig. 1 The monomer of protein NP_744095 with two domains.

     

    398622_1.png

     

    Fig. 2  The teramer of protein NP_744095 as the biomolecule.

     

     

     

     

     

     

     

     

     

     

    Ligand Summary

    Reviews

    References

     

    No references found.

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    502.38 kB23:43, 21 Jun 2010kevinjinActions
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    146.83 kB23:43, 21 Jun 2010kevinjinActions
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