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3n91

    Table of contents
    1. 1. Protein Summary
    2. 2. Ligand Summary

    Title Crystal structure of a STRUCTURAL GENOMICS, UNKNOWN FUNCTION (BACOVA_03430) from Bacteroides ovatus at 2.40 A resolution. To be published
    Site JCSG
    PDB Id 3n91 Target Id
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    Molecular Characteristics
    Source
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    Alias Ids
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    TPS33825,ZP_02066433.1, 384457
    Molecular Weight
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    Da.
    Residues
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    Isoelectric Point
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    Sequence
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      BLAST   FFAS

    Structure Determination
    Method XRAY
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    Chains 1
    Resolution (Å)
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    Rfree
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    Matthews' coefficent 3.62 Rfactor 0.181
    Waters
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    Solvent Content 65.99

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    Ligand Information
    Ligands
    Metals

    Jmol

     
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    Google Scholar output for 3n91
    1. Blind prediction of quaternary structures of homo-oligomeric proteins from amino acid sequences based on templates
    M Morita, M Kakuta, K Shimizu, S Nakamura - 2012 - hoajonline.com
     

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    Protein Summary

    ZP_02066433.1 (BACOVA_03430) is a screted protein which can be divided into two domains: d1 (residues 30-196+333-344 ), and d2 (197-332). D2 is homologous to another jcsg structure 3h3i (Dali Z=10.2 for rmsd of 3.2A for 108 aligned Ca, seq id 14%). Other similar structures to D2 include: outer membrane protein W (2f1v), 2erv, and avidin (1ldo). D1 shares similar to NA/CA exchange protein (pdb 3e9u, Z=9.7), integrin beta-4 (pdb 3fso, Z=9.2).

     

    Based on annotations of sequence homologs in the database, this protein could be adhesin-like. Sequence analysis indicated that D1 matches DUF1735, which is related to another jcsg structure (416718).

     

    Fig 1.  Monomer of ZP_02066433.1

    sp16665a.png

    Ligand Summary

    Reviews

    References

     

    No references found.

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    sp16665a
    102.77 kB17:52, 26 May 2010qxuActions
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