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The Open Protein Structure Annotation Network
PDB Keyword
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3mdp

    Table of contents
    1. 1. Protein Summary
    2. 2. Ligand Summary

    Title Crystal structure of a Putative Cyclic nucleotide-binding protein (Gmet_1532) from Geobacter metallireducens GS-15 at 1.90 A resolution. To be published
    Site JCSG
    PDB Id 3mdp Target Id
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    Molecular Characteristics
    Source
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    Alias Ids
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    TPS30763,YP_384491.1, 2.60.120.10, 322376
    Molecular Weight
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    Da.
    Residues
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    Isoelectric Point
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    Sequence
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      BLAST   FFAS

    Structure Determination
    Method XRAY
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    Chains 1
    Resolution (Å)
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    Rfree
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    Matthews' coefficent 2.63 Rfactor 0.181
    Waters
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    Solvent Content 53.28

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    Ligand Information
    Ligands
    Metals

    Jmol

     
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    Google Scholar output for 3mdp

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    Protein Summary

    Pfam update:This is a structure in the cNMP binding domain family which has known structures already. So not of interest to us.

    Gene Gmet_1532 from Geobacter metallireducens gs-15 encodes the YP_384491 protein which belongs to the cyclic nucleotide (cNMP) binding domain family ( PF00027).  One protomer per asymmetric unit is found in the crystal structure of 3mdp. However, crystal packing analysis suggests that a dimer should be the stable oligomeric form in solution. A succinic acid (SIN) molecule is modeled at the putative active site of the protomer.

    mol..png

    Figure 1. 3mdp structure shows only one protomer in the asu. The SIN ligand is shown as stick.

    Ligand Summary

    Reviews

    References

     

    No references found.

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    Files (1)

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    187.06 kB08:26, 18 Feb 2010gyewonActions
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