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3k6o

    Table of contents
    1. 1. Protein Summary
    2. 2. Ligand Summary

    Title Crystal structure of protein of unknown function DUF1344 (YP_001299214.1) from Bacteroides vulgatus ATCC 8482 at 2.00 A resolution. To be published
    Site JCSG
    PDB Id 3k6o Target Id
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    Molecular Characteristics
    Source
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    Alias Ids
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    TPS25276,YP_001299214.1, 332471
    Molecular Weight
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    Da.
    Residues
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    Isoelectric Point
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    Sequence
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      BLAST   FFAS

    Structure Determination
    Method XRAY
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    Chains 2
    Resolution (Å)
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    Rfree
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    Matthews' coefficent 3.15 Rfactor 0.175
    Waters
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    Solvent Content 60.98

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    Ligand Information
    Ligands
    Metals

    Jmol

     
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    Google Scholar output for 3k6o
    1. Distributed structure determination at the JCSG
    H van den Bedem, G Wolf, Q Xu - Section D: Biological , 2011 - scripts.iucr.org
     

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    Protein Summary

    The protein YP_001299214.1 is annotated as hypothetical protein BVU_1918. There is no PFAM assignment of this protein.

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    Note from PFAM:

    This sequence falls into the family built from target Q5LAY5_BACFN, ie NigD PF12667.

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    The monomer structure, shown below, consists of two domains: an N-terminal beta-barrell domain and a C-terminal beta-sandwich domain.

    0GS13708A.png

     

     

    There are few structural homologs of this protein, as shown by a DALI search.

    N PDB Z-score RMSD LALI NRES %ID TITLE
    1 1qil 6.3 7.9 78 194 9 TOXIC SHOCK SYNDROME TOXIN-1
    2 2qil 6.2 7.9 78 194 9 TOXIC SHOCK SYNDROME TOXIN-1
    3 1ts4 6.2 8.8 78 194 10 TOXIC SHOCK SYNDROME TOXIN-1
    4 1aw7 6.2 7.9 79 194 10 TOXIC SHOCK SYNDROME TOXIN-1
    5 5tss 6.1 8.5 79 194 8 TOXIC SHOCK SYNDROME TOXIN-1
    6 1ts2 6.1 9.0 78 194 10 TOXIC SHOCK SYNDROME TOXIN-1
    7 2ij0 5.9 9.0 80 191 10 TOXIC SHOCK SYNDROME TOXIN-1
    8 4tss 5.8 8.4 79 194 8 TOXIC SHOCK SYNDROME TOXIN-1
    9 3fhw 5.7 3.0 67 100 12 PRIMOSOMAL REPLICATION PROTEIN N
    10 2tss 5.7 9.0 78 194 10 TOXIC SHOCK SYNDROME TOXIN-1

    Most of these proteins have similarities limited to the first domain, as shown by the superposition of the protein (green) on 1qil (magenta).

    GS13708A_1qil.png

    Ligand Summary

    Reviews

    References

     

    No references found.

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