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3hi0

    Table of contents
    1. 1. Protein Summary
    2. 2. Ligand Summary

    Title Crystal structure of Putative exopolyphosphatase (17739545) from AGROBACTERIUM TUMEFACIENS str. C58 (Dupont) at 2.30 A resolution. To be published
    Site JCSG
    PDB Id 3hi0 Target Id
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    Molecular Characteristics
    Source
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    Alias Ids
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    TPS25328,17739545, _0031.003060_, _0023.001152_, _0066.001282_, 333014
    Molecular Weight
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    Da.
    Residues
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    Isoelectric Point
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    Sequence
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      BLAST   FFAS

    Structure Determination
    Method XRAY
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    Chains 2
    Resolution (Å)
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    Rfree
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    Matthews' coefficent 2.74 Rfactor 0.186
    Waters
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    Solvent Content 55.06

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    Ligand Information
    Ligands
    Metals

    Jmol

     
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    Google Scholar output for 3hi0
    1. Enzymatic activity of the soybean ecto-apyrase GS52 is essential for stimulation of nodulation
    K Tanaka, CT Nguyen, M Libault, J Cheng - Plant , 2011 - Am Soc Plant Biol
     

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    Protein Summary

    394589 is an exopolyphosphatase (Ppx) with a novel domain swapping compared to other Ppxs (Figure 1). There are several Ppx structures (2flo, 1u6z,1t6d/1t6c,3cer, 2j4r). Ppx functions as a dimer, so domain arrangement is the same with the dimer despite the swapping (Figure 2).

     

    This protein is now in family PF02541.9 Ppx-GppA CL0108 along with other structures.

     

    Figure 1. Comparison of 394589 (green) to 2flo, showing the significant different in 3rd domain.

    mh15448h-2floa.png

    Figure 2. 394589 dimer (top) vs 1u6z dimer (bottom)

    mg15448h-dimer.png394589 dimer1u6z-dimer.png1u6z dimer

    Ligand Summary

    Reviews

    References

     

    No references found.

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