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3dka

    Table of contents
    1. 1. Protein Summary
    2. 2. Ligand Summary

    Title Crystal structure of a DinB-like Protein (NP_389123.1) from BACILLUS SUBTILIS at 2.30 A resolution. To be published
    Site JCSG
    PDB Id 3dka Target Id
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    Molecular Characteristics
    Source
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    Alias Ids
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    TPS9382,NP_389123.1, PF05163, 85463
    Molecular Weight
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    Da.
    Residues
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    Isoelectric Point
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    Sequence
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      BLAST   FFAS

    Structure Determination
    Method XRAY
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    Chains 1
    Resolution (Å)
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    Rfree
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    Matthews' coefficent 2.07 Rfactor 0.217
    Waters
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    Solvent Content 40.57

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    Ligand Information
    Ligands
    Metals

    Jmol

     
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    Google Scholar output for 3dka
    1. The structure of DinB from Geobacillus stearothermophilus: a representative of a unique four-helix-bundle superfamily
    DR Cooper, K Grelewska, CY Kim - Section F: Structural , 2010 - scripts.iucr.org
     
    2. A New Library of Surface Patches: Design and Applications
    R Gamliel, K Kedem, R Kolodny, C Keasar - 2009 - cs.bgu.ac.il
     

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    Protein Summary

    The yjoA gene from Bacillus subtilis encodes the NP_389123 protein that belongs to the damage-inducible (DinB) group (PF05163). 3dka classifies into the SCOP all alpha class, DinB/YfiT-like putative metalloenzyme superfamily.

    Conserved histidines residues H48, H127 and H131 do not chelate Ni in this structure, as it is the case in the homologous

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    .

     

    See PDB id 3DI5 for more details.

    Ligand Summary

    Reviews

    References

     

    No references found.

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