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    Table of contents
    1. 1. Protein Summary
    2. 2. Ligand Summary

    Title Crystal structure of a DinB-like Protein (NP_389123.1) from BACILLUS SUBTILIS at 2.30 A resolution. To be published
    Site JCSG
    PDB Id 3dka Target Id 389728
    Molecular Characteristics
    Source Bacillus subtilis subsp. subtilis str. 168
    Alias Ids TPS9382,NP_389123.1, PF05163, 85463 Molecular Weight 17792.25 Da.
    Residues 154 Isoelectric Point 5.83
    Sequence mcqsnqivshflshrnvtnelaekiskdhysykpaetsmsaeelvkhiltsfhlfanvikegnaspfqn kqeetetdlnvlaktytektvaileqlteeqldreidltsafgrkvtgrallqlameheihhkgnlfvy vremghtelpfyqqrm
      BLAST   FFAS

    Structure Determination
    Method XRAY Chains 1
    Resolution (Å) 2.30 Rfree 0.269
    Matthews' coefficent 2.07 Rfactor 0.217
    Waters 98 Solvent Content 40.57

    Ligand Information


    Google Scholar output for 3dka
    1. The structure of DinB from Geobacillus stearothermophilus: a representative of a unique four-helix-bundle superfamily
    DR Cooper, K Grelewska, CY Kim - Section F: Structural , 2010 - scripts.iucr.org
    2. A New Library of Surface Patches: Design and Applications
    R Gamliel, K Kedem, R Kolodny, C Keasar - 2009 - cs.bgu.ac.il

    Protein Summary

    The yjoA gene from Bacillus subtilis encodes the NP_389123 protein that belongs to the damage-inducible (DinB) group (PF05163). 3dka classifies into the SCOP all alpha class, DinB/YfiT-like putative metalloenzyme superfamily.

    Conserved histidines residues H48, H127 and H131 do not chelate Ni in this structure, as it is the case in the homologous PDB:3di5.


    See PDB id 3DI5 for more details.

    Ligand Summary




    No references found.

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