The Open Protein Structure Annotation Network
PDB Keyword


    Table of contents
    1. 1. Protein Summary
    2. 2. Ligand Summary
    3. 3. References

    Title Crystal structure of predicted CIB-like hydrolase (NP_393672.1) from Thermoplasma acidophilum at 1.45 A resolution. To be published
    Site JCSG
    PDB Id 3bdi Target Id 388819
    Molecular Characteristics
    Source Thermoplasma acidophilum dsm 1728
    Alias Ids TPS1779,NP_393672.1, 383155 Molecular Weight 23053.26 Da.
    Residues 206 Isoelectric Point 8.65
    Sequence malqeefidvngtrvfqrkmvtdsnrrsialfhgysftsmdwdkadlfnnyskigynvyapdypgfgrs assekygidrgdlkhaaefirdylkangvarsvimgasmgggmvimttlqypdivdgiiavapawvesl kgdmkkirqktllvwgskdhvvpialskeyasiisgsrleivegsghpvyikkpeefvritvdflrnl
      BLAST   FFAS

    Structure Determination
    Method XRAY Chains 1
    Resolution (Å) 1.45 Rfree 0.189
    Matthews' coefficent 2.17 Rfactor 0.163
    Waters 203 Solvent Content 43.32

    Ligand Information


    Google Scholar output for 3bdi
    1. Structural and functional characterization of a promiscuous feruloyl esterase (Est1E) from the rumen bacterium Butyrivibrio proteoclasticus
    DC Goldstone, SG Villas_Bas, M Till - Proteins: Structure, , 2010 - Wiley Online Library

    Protein Summary

    NP_393672.1 has been assigned as hydrolase belong to alpha/beta superfamily from PSCA.  There is no Pfam assignment available for this target at PSCA and Pfam site.   There is a lot of structural homolog to this target based on Dali search results.NP_393672.1 has been directly compared with 1CRT, 1MT3, 1BRT, 1Q0R, 1WOM, 1Y37. The catalytic triad: Ser, Asp and His, has been identified in the structural. No SEC data is available for this target. Based on interface interaction calculation, it should be a monomer.

    Ligand Summary





    No references found.

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