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The Open Protein Structure Annotation Network
PDB Keyword
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386390

    Table of contents
    1. 1. Protein Summary
    2. 2. Ligand Summary

    Site JCSG
    Status Diffraction
    Target Id
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    Molecular Characteristics
    Source
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    reference to undefined name 'note' Exception of type 'MindTouch.Deki.Script.Runtime.DekiScriptUndefinedNameException' was thrown. (click for details)
    Alias Ids
    reference to undefined name 'note' Exception of type 'MindTouch.Deki.Script.Runtime.DekiScriptUndefinedNameException' was thrown. (click for details)
    TPS73832,NP_812381.1
    Molecular Weight
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    Da.
    Residues
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    Isoelectric Point
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    Sequence
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      BLAST   FFAS
    Ligand Information
    Ligands
    Metals
    Google Scholar output for

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    Protein Summary


    This protein is classified in the Pfam family DUF1080 (PF06439) in the concanavalin clan CL0004 which are concanavalin-like lectin/glucanase proteins. About 40% of the total proteins in the DUF1080 family are from bacteroidetes, and ~97% are bacterial proteins, but there are a few viral, archael and eukaryotic proteins (the 9 eukaryotic proteins are from fungi).

    This is also a secreted protein. There are 3 other structures in the DUF1080 Pfam, all JCSG structures from gut bacteria with PDB ids 3s5q, 3nmb and 3osd.

    However, the main difference in this protein/structure is that each monomer is made up of 2 DUF1080 domains so there is a gene duplication. Out of the ~1000 sequences in the DUF1080, ~77 of them have a domain architecture of this kind where the entire protein is made up of only 2 DUF1080 domains and ~600 proteins have a only a single DUF1080 domain composition as in the other 3 structures.

    This could be a glycosyl hydrolase.

    Fig1.png

    Ligand Summary

    Reviews

    References

     

    No references found.

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