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The Open Protein Structure Annotation Network
PDB Keyword
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371768

    Table of contents
    1. 1. Protein Summary
    2. 2. Ligand Summary

    Site JCSG
    Status Crystallized
    Target Id
    reference to undefined name 'note' Exception of type 'MindTouch.Deki.Script.Runtime.DekiScriptUndefinedNameException' was thrown. (click for details)
    Molecular Characteristics
    Source
    reference to undefined name 'note' Exception of type 'MindTouch.Deki.Script.Runtime.DekiScriptUndefinedNameException' was thrown. (click for details)
    reference to undefined name 'note' Exception of type 'MindTouch.Deki.Script.Runtime.DekiScriptUndefinedNameException' was thrown. (click for details)
    Alias Ids
    reference to undefined name 'note' Exception of type 'MindTouch.Deki.Script.Runtime.DekiScriptUndefinedNameException' was thrown. (click for details)
    TPS6528,YP_752209.1
    Molecular Weight
    reference to undefined name 'note' Exception of type 'MindTouch.Deki.Script.Runtime.DekiScriptUndefinedNameException' was thrown. (click for details)
    Da.
    Residues
    reference to undefined name 'note' Exception of type 'MindTouch.Deki.Script.Runtime.DekiScriptUndefinedNameException' was thrown. (click for details)
    Isoelectric Point
    reference to undefined name 'note' Exception of type 'MindTouch.Deki.Script.Runtime.DekiScriptUndefinedNameException' was thrown. (click for details)
    Sequence
    reference to undefined name 'note' Exception of type 'MindTouch.Deki.Script.Runtime.DekiScriptUndefinedNameException' was thrown. (click for details)
      BLAST   FFAS
    Ligand Information
    Ligands
    Metals
    Google Scholar output for

    reference to undefined name 'note' Exception of type 'MindTouch.Deki.Script.Runtime.DekiScriptUndefinedNameException' was thrown. (click for details)

    Protein Summary

    This protein, gi|114564695|ref|YP_752209.1|,  is a Cupin 2 conserved barrel domain protein from Shewanella frigidimarina NCIMB 400. It belongs to PFAM
    PF07883 (http://pfam.sanger.ac.uk/family?acc=PF07883).
    The protein is all b-stranded.

    Fig 1. Dimer is most likely the biologically relevant oligomer. Each monomer shows a Ni ion in the putative active site to which an unknown ligand (UNL) is bound. There are a couple of structural homologs of this protein: 2i45.pdb  2oa2.pdb. The His residues in the active site is conserved in 2i45, although no ligand/ion is bound therein.


    Fig 2. UNL bound to Ni ion in the active site.


    Ligand Summary

    Unknown ligand (UNL) bound to NI ion.

    Reviews

    References

     

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