The Open Protein Structure Annotation Network
PDB Keyword


    Table of contents
    1. 1. Protein Summary
    2. 2. Ligand Summary
    3. 3. References

    Title Crystal structure of 2,5-diketo-D-gluconic acid reductase (TM1009) from Thermotoga maritima at 2.40 A resolution. To be published
    Site JCSG
    PDB Id 1vp5 Target Id 282876
    Molecular Characteristics
    Source Thermotoga maritima msb8
    Alias Ids TPS1251,TM1009, _0087.001827_, _0116.001267_, 282597 Molecular Weight 33242.76 Da.
    Residues 286 Isoelectric Point 5.97
    Sequence mqvpkvtlnngvempilgygvfqippekteecvyeaikvgyrlidtaasymneegvgraikraidegiv rreelfvttklwvsdvgyestkkafekslkklqleyidlylihqpfgdvhcawkameemykdglvraig vsnfypdrlmdlmvhheivpavnqieihpfyqrqeeiefmrnyniqpeawgpfaegrknifqngvlrsi aekygktvaqvilrwltqkgivaipktvrrermkenisifdfeltqedmekiatldegqsaffshrdpe vvkwicslkr
      BLAST   FFAS

    Structure Determination
    Method XRAY Chains 2
    Resolution (Å) 2.40 Rfree 0.20258
    Matthews' coefficent 2.73 Rfactor 0.15113
    Waters 233 Solvent Content 54.63

    Access denied for user 'root'@'localhost' (using password: YES) (click for details)

    Ligand Information


    Google Scholar output for 1vp5
    1. Identification of a novel NADH-specific aldo-keto reductase using sequence and structural homologies
    E Di Luccio, RA Elling, DK Wilson - Biochemical Journal, 2006 - ncbi.nlm.nih.gov
    2. Structural and biochemical analyses of YvgN and YtbE from Bacillus subtilis
    J Lei, YF Zhou, LF Li, XD Su - Protein Science, 2009 - Wiley Online Library
    3. Expression, purification, crystallization and preliminary X-ray analysis of conjugated polyketone reductase C2 (CPR-C2) from Candida parapsilosis IFO 0708
    A Yamamura, S Maruoka, J Ohtsuka - Section F: Structural , 2009 - scripts.iucr.org

    Protein Summary

    The TM1009 gene from Thermotoga maritima encodes a 2,5-diketo-D-gluconic acid reductase EC:  The enzyme belongs to aldo/keto reductase superfamily of soluble NAD(P)(H) oxidoreductases  PF00248 COG0656.  The catalyzed reaction is the reduction of aldehydes and ketones to primary and secondary alcohols. Members of the family have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5-beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.

    Ligand Summary





    No references found.

    Tag page

    Files (0)

    You must login to post a comment.
    All content on this site is licensed under a Creative Commons Attribution 3.0 License
    Powered by MindTouch