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The Open Protein Structure Annotation Network
PDB Keyword
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1vmh

    Table of contents
    1. 1. Protein Summary
    2. 2. Ligand Summary
    3. 3. References

    Title Crystal structure of Uncharacterized conserved protein YjbQ/UPF0047 family, ortholog yugU B.subtilis (15023806) from Clostridium acetobutylicum at 1.31 A resolution. To be published
    Site JCSG
    PDB Id 1vmh Target Id
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    Molecular Characteristics
    Source
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    Alias Ids
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    TPS1373,15023806, 289433, 289424
    Molecular Weight
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    Da.
    Residues
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    Isoelectric Point
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    Sequence
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      BLAST   FFAS

    Structure Determination
    Method XRAY
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    Chains 1
    Resolution (Å)
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    Rfree
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    Matthews' coefficent 1.87 Rfactor 0.1574
    Waters
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    Solvent Content 33.86

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    Ligand Information
    Ligands
    Metals

    Jmol

     
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    Google Scholar output for 1vmh
    1. Sensitive genome-wide screen for low secondary enzymatic activities: the YjbQ family shows thiamin phosphate synthase activity
    E Morett, G Saab-Rincn, L Olvera, M Olvera - Journal of molecular , 2008 - Elsevier
     
    2. Post to
    A Paiardini, R Sali, F Bossa - BMC structural , 2008 - biomedcentral.com
     
    3. Quantum Chemical Investigations on Intraresidue Carbonyl_ Carbonyl Contacts in Aspartates of High-Resolution Protein Structures
    TK Pal, R Sankararamakrishnan - The Journal of Physical , 2009 - ACS Publications
     
    4. Ligands in PSI structures
    A Kumar, HJ Chiu, HL Axelrod, A Morse - Section F: Structural , 2010 - scripts.iucr.org
     

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    Protein Summary

    The gene CA_C0907 from Clostridium acetobutylicum encodes the NP_347543 protein belonging to the UPF0047 group ( PF01894). Its neighboring gene, CA_C0906 encodes an alanyl-tRNA synthetase related protein.

    SCOP classifies 1vmh in the alpha+beta class, YjbQ-like (super)family. DALI top hit is with

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    (Z=23).

    The structures of several homologues of this protein have been solved:

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     (98% id, Z=25),
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    (Z=20),
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    , (Z=20),
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    (Z=21).  The protein with PDB accession code 1vph has been annotated on TOPSAN as dodecin-like protein.  This structure entry represents a domain from the full-length protein. 

    Ligand Summary



    References

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