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The Open Protein Structure Annotation Network
PDB Keyword
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1vl0

    Table of contents
    1. 1. Protein Summary
    2. 2. Ligand Summary
    3. 3. References

    Title Crystal structure of DTDP-4-dehydrorhamnose reductase, rfbD ortholog (CAC2315) from Clostridium acetobutylicum at 2.05 A resolution. To be published
    Site JCSG
    PDB Id 1vl0 Target Id
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    Molecular Characteristics
    Source
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    Alias Ids
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    TPS1350,15025322
    Molecular Weight
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    Da.
    Residues
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    Isoelectric Point
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    Sequence
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      BLAST   FFAS

    Structure Determination
    Method XRAY
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    Chains 3
    Resolution (Å)
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    Rfree
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    Matthews' coefficent 2.64 Rfactor 0.16921
    Waters
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    Solvent Content 53.40

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    Ligand Information
    Ligands
    Metals

    Jmol

     
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    Google Scholar output for 1vl0
    1. The Buccaneer software for automated model building. 1. Tracing protein chains
    K Cowtan - Acta Crystallographica Section D: Biological , 2006 - scripts.iucr.org
     
    2. Decision-making in structure solution using Bayesian estimates of map quality: the PHENIX AutoSol wizard
    TC Terwilliger, PD Adams, RJ Read - Section D: Biological , 2009 - scripts.iucr.org
     
    3. Fast and accurate algorithms for protein side-chain packing
    J Xu, B Berger - Journal of the ACM (JACM), 2006 - dl.acm.org
     
    4. IX. STRUCTURE AND CATALYTIC MECHANISM
    M ADENOSYLTRANSFERASE - METHIONINE , 2011 - Wiley Online Library
     
    5. Modeling of folds and folding pathways for some protein families of (_+ _)-and (_/_)-classes
    AB Gordeev, AV Efimov - 2012 - Taylor & Francis
     

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    Protein Summary

    The gene CA_C2315 from Clostridium acetobutylicum encodes an enzyme DTDP-4-dehydrorhamnose reductase

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    , EC:1.1.1.133 COG1091.  Alternative names: dTDP-4-keto-L-rhamnose reductase, dTDP-6-deoxy-L-mannose dehydrogenase.  The enzyme belongs to the class of alpha and beta (a+b) proteins and reveals NAD(P)-binding Rossmann-fold domains SCOP51734
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    . It belongs to the large SDR (short chain dehydrogenase/reductase) family, a branch of the RED (reductases/epimerases/dehydrogenases) superfamily. SDR family members are predominantly monomeric or dimeric, with dimers of dimers also significantly represented. 1vl0 presents a unique trimeric arrangement. The enzyme catalyzes the following reaction: dTDP-6-deoxy-L-mannose + NADP(+) <=> dTDP-4-dehydro-6-deoxy-L-mannose + NADPH.  The enzyme participates in 3 metabolic pathways: nucleotide sugars metabolism, streptomycin biosynthesis, and polyketide sugar unit biosynthesis.

    Ligand Summary



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