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The Open Protein Structure Annotation Network
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1vky

    Table of contents
    1. 1. Protein Summary
    2. 2. Ligand Summary
    3. 3. References

    Title Crystal structure of S-adenosylmethionine:tRNA ribosyltransferase-isomerase (QueA) from Thermotoga maritima at 2.0 A resolution reveals a new fold. Proteins 59 869-874 2005
    Site JCSG
    PDB Id 1vky Target Id
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    Molecular Characteristics
    Source
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    Alias Ids
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    TPS1217,TM0574, 84935
    Molecular Weight
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    Da.
    Residues
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    Isoelectric Point
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    Sequence
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      BLAST   FFAS

    Structure Determination
    Method XRAY
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    Chains 2
    Resolution (Å)
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    Rfree
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    Matthews' coefficent 2.98 Rfactor 0.17951
    Waters
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    Solvent Content 58.78

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    Ligand Information
    Ligands
    Metals

    Jmol

     
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    Google Scholar output for 1vky
    1. The Buccaneer software for automated model building. 1. Tracing protein chains
    K Cowtan - Acta Crystallographica Section D: Biological , 2006 - scripts.iucr.org
     
    2. Natural history of S-adenosylmethionine-binding proteins
    PZ Kozbial, AR Mushegian - BMC structural biology, 2005 - w09.biomedcentral.com
     
    3. Small but versatile: the extraordinary functional and structural diversity of the beta-grasp fold
    AM Burroughs, S Balaji, LM Iyer, L Aravind - Biol Direct, 2007 - biomedcentral.com
     
    4. Microbial biochemistry, physiology, and biotechnology of hyperthermophilic Thermotoga species
    SB Conners, EF Mongodin, MR Johnson - FEMS microbiology , 2006 - Wiley Online Library
     
    5. Domain definition and target classification for CASP6
    M Tress, CH Tai, G Wang, I Ezkurdia - PROTEINS: , 2005 - Wiley Online Library
     
    6. Cradle-loop barrels and the concept of metafolds in protein classification by natural descent
    V Alva, KK Koretke, M Coles, AN Lupas - Current opinion in structural , 2008 - Elsevier
     
    7. Molecular structure and metal-binding properties of the periplasmic CopK protein expressed in Cupriavidus metallidurans CH34 during copper challenge
    B Bersch, A Favier, P Schanda, S Van Aelst - Journal of molecular , 2008 - Elsevier
     
    8. Autoindexing with outlier rejection and identification of superimposed lattices
    NK Sauter, BK Poon - Journal of Applied Crystallography, 2010 - scripts.iucr.org
     
    9. Crystal structure of S_adenosylmethionine: tRNA ribosyltransferase_isomerase (QueA) from Thermotoga maritima at 2.0 resolution reveals a new fold
    I Mathews, R Schwarzenbacher - Proteins: Structure, , 2005 - Wiley Online Library
     
    10. Protein structure prediction based on the sliced lattice model
    CC Wang, CB Yang, HY Ann - 2008 Conference on , 2005 - etd.lib.nsysu.edu.tw
     
    11. Direct evidence for CH___ _ interaction mediated stabilization of Pro-cisPro bond in peptides with Pro-Pro-Aromatic motifs
    HK Ganguly, B Majumder - Journal of the , 2012 - ACS Publications
     
    12. Search for identical octapeptides in unrelated proteins: Structural plasticity revisited
    KM Saravanan, S Selvaraj - Peptide Science, 2012 - Wiley Online Library
     
    13. Structural and Functional Studies of tRNA-Guanine Transglycosylase: A putative Drug Target for Shigellosis Therapy
    B Stengl - 2006 - archiv.ub.uni-marburg.de
     
    14. Prediction of Protein Backbone Based on the Sliced Lattice Model
    CC Wang, CB Yang, HY Ann, HY Chang - 2008 - csie.npu.edu.tw
     
    15. Carbohydrate utilization pathway analysis in the hyperthermophile Thermotoga maritima
    SB Conners - 2006 - repository.lib.ncsu.edu
     

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    Protein Summary

    The TM0574 gene of Thermotoga maritima encodes an S-adenosylmethionine:tRNA ribosyltransferase-isomerase (QueA; Pfam02547). The structure is made of a large alpha/beta/alpha domain with a small inserted beta-barrel domain. This structure defines the novel QueA-like fold (SCOP sunid:111336).

    Ligand Summary



    References

    Reviews

    References

     

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