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1o0x

    Table of contents
    1. 1. Protein Summary
    2. 2. Ligand Summary
    3. 3. References

    Title Crystal structure of a methionine aminopeptidase (TM1478) from Thermotoga maritima at 1.9 A resolution. Proteins 56 396-400 2004
    Site JCSG
    PDB Id 1o0x Target Id
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    Molecular Characteristics
    Source
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    Alias Ids
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    TPS1292,TM1478, 84823, 84817
    Molecular Weight
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    Da.
    Residues
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    Isoelectric Point
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    Sequence
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      BLAST   FFAS

    Structure Determination
    Method XRAY
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    Chains 1
    Resolution (Å)
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    Rfree
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    Matthews' coefficent 2.47 Rfactor 0.203
    Waters
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    Solvent Content 50.14

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    Ligand Information
    Ligands
    Metals

    Jmol

     
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    Google Scholar output for 1o0x
    1. Assessment of homology_based predictions in CASP5
    A Tramontano, V Morea - Proteins: Structure, Function, and , 2003 - Wiley Online Library
     
    2. Microbial biochemistry, physiology, and biotechnology of hyperthermophilic Thermotoga species
    SB Conners, EF Mongodin, MR Johnson - FEMS microbiology , 2006 - Wiley Online Library
     
    3. Evaluating the usefulness of protein structure models for molecular replacement
    A Giorgetti, D Raimondo, AE Miele - Bioinformatics, 2005 - Oxford Univ Press
     
    4. Using property based sequence motifs and 3D modeling to determine structure and functional regions of proteins
    I Ovidiu, O Numan, VS Mathura - Current medicinal , 2004 - ingentaconnect.com
     
    5. CASP5 target classification
    LN Kinch, Y Qi, TJP Hubbard - : Structure, Function, and , 2003 - Wiley Online Library
     
    6. Automatic procedure for using models of proteins in molecular replacement
    D Raimondo, A Giorgetti, S Bosi - PROTEINS: Structure, , 2007 - Wiley Online Library
     
    7. Crystal structure of a methionine aminopeptidase (TM1478) from Thermotoga maritima at 1.9 resolution
    G Spraggon, R Schwarzenbacher - Proteins: Structure, , 2004 - Wiley Online Library
     
    8. A fold-recognition approach to loop modeling
    C Levefelt, D Lundh - Journal of molecular modeling, 2006 - Springer
     
    9. A seqlet-based maximum entropy Markov approach for protein secondary structure prediction
    Q Dong, X Wang, L Lin, Y Guan - Science in China Series C: Life Sciences, 2005 - Springer
     
    10. Structure_based identification of catalytic residues
    R Yahalom, D Reshef, A Wiener - Proteins: Structure, , 2011 - Wiley Online Library
     
    11. A fourier fingerprint-based method for protein surface representation
    MJ Bayley, EJ Gardiner, P Willett - Journal of chemical , 2005 - ACS Publications
     
    12. Protein Structure Prediction Using an Augmented Homology Modeling Method: Key Importance of Iterative-Procedures for Obtaining Consistent Quality Models
    S McDonald, S Mylvaganam - Current , 2005 - ingentaconnect.com
     
    13. Of sequence and structure: Strategies of protein thermostability in evolutionary perspective
    IN Berezovsky, EI Shakhnovich - Arxiv preprint q-bio/0408007, 2004 - arxiv.org
     
    14. Carbohydrate utilization pathway analysis in the hyperthermophile Thermotoga maritima
    SB Conners - 2006 - repository.lib.ncsu.edu
     
    15. Predicting protein interaction interfaces from protein sequences: Case studies of subtilisin and phycocyanin
    BB Xie, XL Chen, XY Zhang, HL He - Proteins: Structure, , 2008 - Wiley Online Library
     
    16. Fragment Library-Based Representation System for Protein Conformation
    R Kim, CY Choi - Protein and Peptide Letters, 2006 - ingentaconnect.com
     

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    Protein Summary

    The TM1478 gene of Thermotoga maritima encodes a methionine aminopeptidase (MAP; EC 3.4.11.18, PubMed:15211524, cd01086), that removes the ubiquitous N-terminal methionine from nascent proteins.  Methionine aminopeptidases are target proteins for the development of both anticancer and antibacterial compounds (PubMed:16420038).

    Protein encoded by TM1478 has creatinase/aminopeptidase fold (SCOP sunid:55919) with duplication composed of two very similar alpha+beta folds.


    Ligand Summary



    References

    Reviews

    References

     

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