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PF13193

    Table of contents
    1. 1. Topsan Members
    2. 2. Summary

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    Resources
    Pfam ID: DUF4009 PDB: 1md9_A
    Solved by: non-psi Priority Score: 4.6
    Member of this family is in PDB.
    Co-occurence with annotated domain(s) (no restrictions on number of architectures).
    HMMER:
      # sequence matches: 22928 # architectures: 1007 # taxonomy ids:1984
    FFAS:
      Top FFAS hit in PDB: "1pg3A, acetyl-CoA synthetase" No significant hits in Pfam.
    GRDB:
      Top significant hit (PDB90): "3e7wA, ligase ; crystal structure of dlta: implications for the reaction mechanism of non-ribosomal peptide synthetase (nrps) adenylation domains "
    CATH: CATH Domain E-value CATH Node
      3iteB02 1.40E-05
      3e7wA02 1.70E-08 3.30.300.30
    FUNFAM (eval=1.4E-11 ): Acetyl-coenzyme A synthetase -like
    PUBSERVER:
      Publications(s) found: 1300
      Publications(s) meeting filtering criteria: 83
    GeneSilico Metaserver: (Login and password: Jamboree)
    PDBBLAST: PDB: 1ry2_A SCOP: e.23.1.1 ECC: 6.2.1.1
    PRC: PDB: 1ry2_A SCOP: e.23.1.1 ECC: 6.2.1.1
    HHBLITS: PDB: 1v25_A SCOP: e.23.1.1 ECC: 6.2.1.3
    COMPASS: PDB: 3e7w_A SCOP: predicted e.23.1 ECC: 6.1.1.13
    CSBLAST: PDB: 1ry2_A SCOP: e.23.1.1 ECC: 6.2.1.1
    HHSEARCH: PDB: 1amu_A SCOP: e.23.1.1 ECC: 5.1.1.11
    E.coli Annotations
    NCBI: 16128320 PORTECO PORAL: prpE GeneExpDB: b0335

    Topsan Members

    Tag pages as 'PF13193' to appear in this list.

    No TOPSAN member(s) found.

    Summary

    This is probably not a true domain but part of the AMP-binding domain.  We intend to try and delete this entry from Pfam and extend the AMP-binding domain.

    Reviews

    References

     

    No references found.

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