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PF09940

    Table of contents
    1. 1. Topsan Members
    2. 2. Summary

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    Resources
    Pfam ID: DUF2172 PDB: 3k9t_A
    Solved by: non-psi Priority Score: 2.6
    Member of this family is in PDB.
    Member of this clan is in PDB.
    HMMER:
      # sequence matches: 146 # architectures: 5 # taxonomy ids:104
    FFAS:
      Top FFAS hit in PDB: "3k9tA, putative peptidase" Top FFAS hit in Pfam: "PF04389, Peptidase family M28 "
    GRDB:
      Top significant hit (PDB90): "3k9tA, hydrolase ; crystal structure of putative peptidase (np_348812.1) from clostridium acetobutylicum at 2.37 a resolution "
      Top significant hit (PFAM25U): "PF04389, Peptidase family M28"
    CATH: CATH Domain E-value CATH Node
      1z8lB01 3.10E-10
      1cg2A01 0.0026 3.40.630.10
    FUNFAM (eval=0.0062 ): N-acetylated-alpha-linked acidic dipeptidase 2 -like
    PUBSERVER:
      Publications(s) found: 1022
      Publications(s) meeting filtering criteria: 137
    GeneSilico Metaserver: (Login and password: Jamboree)
    PDBBLAST: PDB: 3k9t_A SCOP: predicted c.56.5.5
    FFAS: PDB: 3k9t_A SCOP: predicted c.56.5.5
    MGENTHREADER: PDB: 2ek8_A SCOP: predicted c.56.5 ECC: predicted 3.4.-.-
    PRC: PDB: 1de4_C SCOP: predicted c.56.5 ECC: predicted 3.4.-.-
    SPARKS: PDB: 1qq9_A SCOP: c.56.5.4 ECC: 3.4.11.-
    BLASTP: PDB: 3k9t_A SCOP: predicted c.56.5.5
    HHBLITS: PDB: 3k9t_A SCOP: predicted c.56.5.5
    COMPASS: PDB: 1cp7_A SCOP: c.56.5.4 ECC: 3.4.11.-
    COMA: PDB: 3k9t_A SCOP: predicted c.56.5.5
    CSBLAST: PDB: 3k9t_A SCOP: predicted c.56.5.5
    HHSEARCH: PDB: 3k9t_A SCOP: predicted c.56.5.5

    Topsan Members

    Tag pages as 'PF09940' to appear in this list.

    Name Annotation Author(s)
    3k9t
    This protein is annotated as an aminopeptidase domain contaning protein belonging to a new Pfam family of DUFs, DUF2172, PF09940. This family is comprised of 44 proteins from 41 species, mostly (33 o... debanu (3 edits)

    Summary

    Your annotation here.

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