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PF09393

    Table of contents
    1. 1. Topsan Members
    2. 2. Summary

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    Resources
    Pfam ID: DUF2001 PDB: 2guj_A
    Solved by: NESG Priority Score: 2.6
    Member of this family is in PDB.
    Member of this clan is in PDB.
    HMMER:
      # sequence matches: 122 # architectures: 1 # taxonomy ids:70
    FFAS:
      Top FFAS hit in PDB: "2gujA, Phage-like element PBSX protein xkdM" Top FFAS hit in Pfam: "PF05638, Protein of unknown function (DUF796) "
    GRDB:
      Top significant hit (PDB90): "2gujA, structural genomics, unknown function ; three dimensional structure of the protein p54332 from bacillus subtilis. northeast structural genomics consortium target sr353. "
    CATH: CATH Domain E-value CATH Node
      2gujB01 1.40E-52
    PUBSERVER:
      Publications(s) found: 56
      Publications(s) meeting filtering criteria: 0
    GeneSilico Metaserver: (Login and password: Jamboree)
    PDBBLAST: PDB: 2guj_A
    FFAS: PDB: 2guj_A
    MGENTHREADER: PDB: 2guj_A
    BLASTP: PDB: 2guj_A
    HHBLITS: PDB: 2guj_A
    COMPASS: PDB: 2guj_A
    CSBLAST: PDB: 2guj_A
    HHSEARCH: PDB: 2guj_A

    Topsan Members

    Tag pages as 'PF09393' to appear in this list.

    Name Annotation Author(s)
    2guj

    Summary

    Pfam family PFAM:PF09393 {Protein of unknown function (DUF2001) } with 33 members in NR database and additional 3 members in the metagenomic datasets is represented in Bacteria, and Viruses. The first structural representative solved (PDB Id: TOPSAN:2guj) was subject to FATCAT structural similarity search that indicated similarity to SCOP (v. 1.73) domain SCOP:d1ylna2 classified as Hcp1-like fold. Based on marginal prediction from FFAS confirmed by structural similarity one can argue that this family is remotely homologous to previously known structures from 'd1ylna2' this fold.

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