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PF09351

    Table of contents
    1. 1. Topsan Members
    2. 2. Summary

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    Resources
    Pfam ID: DUF1993 PDB: 2oqm_A
    Solved by: JCSG Priority Score: 2.6
    Member of this family is in PDB.
    Member of this clan is in PDB.
    HMMER:
      # sequence matches: 297 # architectures: 4 # taxonomy ids:155
    FFAS:
      Top FFAS hit in PDB: "2oqmA, Hypothetical protein" Top FFAS hit in Pfam: "PF05163, DinB family "
    GRDB:
      Top significant hit (PDB90): "2oqmA, structural genomics, unknown function ; crystal structure of hypothetical protein (yp_561575.1) from shewanella denitrificans os-217 at 1.83 a resolution "
      Top significant hit (PFAM25U): "PF05163, DinB family"
    CATH: CATH Domain E-value CATH Node
      2oqmB01 6.60E-65 1.20.120.450
    PUBSERVER:
      Publications(s) found: 154
      Publications(s) meeting filtering criteria: 0
    GeneSilico Metaserver: (Login and password: Jamboree)
    FFAS: PDB: 2oqm_A SCOP: predicted a.213.1.1
    PHYRE: PDB: 2oqm_A SCOP: predicted a.213.1.1
    HHBLITS: PDB: 2oqm_A SCOP: predicted a.213.1.1
    COMPASS: PDB: 2oqm_A SCOP: predicted a.213.1.1
    HHSEARCH: PDB: 2oqm_A SCOP: predicted a.213.1.1

    Topsan Members

    Tag pages as 'PF09351' to appear in this list.

    Name Annotation Author(s)
    2oqm
      Gene Sden_0562 from Shewanella denitrificans os-217 encodes the YP_561575 protein from the DUF1993 group (PF09351). SCOP classifies 2oqm in the all alpha class, DinB/YfiT-like putative metalloenzyme... pascual (3 edits)
    agb (1 edits)
    chrisx (1 edits)

    Summary

    Pfam family PFAM:PF09351 {Domain of unknown function (DUF1993) } with 255 members in NR database and additional 147 members in the metagenomic datasets is represented in Bacteria, and Eukaryota. The first structural representative solved (PDB Id: TOPSAN:2oqm) was subject to FATCAT structural similarity search that indicated similarity to SCOP (v. 1.73) domain SCOP:d1rxqa_ classified as Dinb/yfit-like putative metalloenzymes fold. (Note: new fold solved by PSI). Profile-profile methods confirm remote homology between this family and superfamily of Dinb/yfit-like putative metalloenzymes; fold of the same name. Based on remote homology confirmed by the structure one can hypothesize that this family is probably binds nucleic acids, possibily damage inducible proteins

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