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PF09224

    Table of contents
    1. 1. Topsan Members
    2. 2. Summary

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    Resources
    Pfam ID: DUF1961 PDB: 1oq1_A
    Solved by: MCSG Priority Score: 1.6
    Member of this family is in PDB.
    HMMER:
      # sequence matches: 23 # architectures: 1 # taxonomy ids:18
    FFAS:
      Top FFAS hit in PDB: "1oq1A, Protein yesU" Top FFAS hit in Pfam: "PF06439, Domain of Unknown Function (DUF1080) "
    GRDB:
      Top significant hit (PDB90): "1oq1A, structural genomics, unknown function ; crystal structure of hypothetical protein apc1120 from bacillus subtilis "
      Top significant hit (PFAM25U): "PF06439, Domain of Unknown Function (DUF1080)"
    CATH: CATH Domain E-value CATH Node
      1oq1A00 8.60E-91 2.60.120.200
    PUBSERVER:
      Publications(s) found: 29
      Publications(s) meeting filtering criteria: 0
    GeneSilico Metaserver: (Login and password: Jamboree)
    PDBBLAST: PDB: 1oq1_A SCOP: b.29.1.17
    FFAS: PDB: 1oq1_A SCOP: b.29.1.17
    MGENTHREADER: PDB: 1oq1_A SCOP: b.29.1.17
    PRC: PDB: 1oq1_A SCOP: b.29.1.17
    SPARKS: PDB: 1oq1_A SCOP: b.29.1.17
    BLASTP: PDB: 1oq1_A SCOP: b.29.1.17
    HHBLITS: PDB: 1oq1_A SCOP: b.29.1.17
    COMPASS: PDB: 1oq1_A SCOP: b.29.1.17
    CSBLAST: PDB: 1oq1_A SCOP: b.29.1.17
    HHSEARCH: PDB: 1oq1_A SCOP: b.29.1.17

    Topsan Members

    Tag pages as 'PF09224' to appear in this list.

    Name Annotation Author(s)
    1oq1

    Summary

    Pfam family PFAM:PF09224 {Domain of unknown function (DUF1961)} with 11 members in NR database and additional 7 members in the metagenomic datasets is represented in Bacteria. The first structural representative solved (PDB Id: TOPSAN:1oq1) was subject to FATCAT structural similarity search that indicated similarity to SCOP (v. 1.73) domain SCOP:d1gbga_ classified as Concanavalin A-like lectins/glucanases fold. Based on marginal prediction from FFAS confirmed by structural similarity one can argue that this family is remotely homologous to previously known structures from 'd1gbga_' this fold.

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