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PF09209

    Table of contents
    1. 1. Topsan Members
    2. 2. Summary

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    Resources
    Pfam ID: DUF1956 PDB: 1t33_A
    Solved by: MCSG Priority Score: 3.6
    Member of this family is in PDB.
    Member of this clan is in PDB.
    Co-occurence with annotated domain(s) (no restrictions on number of architectures).
    HMMER:
      # sequence matches: 300 # architectures: 4 # taxonomy ids:177
    FFAS:
      Top FFAS hit in PDB: "1t33A, putative transcriptional repressor (TetR/AcrR" Top FFAS hit in Pfam: "PF08362, YcdC-like protein, C-terminal region "
    GRDB:
      Top significant hit (PDB90): "1t33A, transcription ; structural genomics, the crystal structure of a putative transcriptional repressor (tetr/acrr family) from salmonella typhimurim lt2 "
      Top significant hit (PFAM25U): "PF08362, YcdC-like protein, C-terminal region"
    CATH: CATH Domain E-value CATH Node
      3himB00 0.0058
      2oi8A00 0.0068 1.10.357.10
    PUBSERVER:
      Publications(s) found: 345
      Publications(s) meeting filtering criteria: 11
    GeneSilico Metaserver: (Login and password: Jamboree)
    PDBBLAST: PDB: 1t33_A SCOP: predicted a.121.1
    MGENTHREADER: PDB: 1t33_A SCOP: predicted a.121.1
    PRC: PDB: 1t33_A SCOP: predicted a.121.1
    SPARKS: PDB: 1t33_A SCOP: predicted a.121.1
    BLASTP: PDB: 1t33_A SCOP: predicted a.121.1
    HHBLITS: PDB: 1t33_A SCOP: predicted a.121.1
    COMPASS: PDB: 1t33_A SCOP: predicted a.121.1
    CSBLAST: PDB: 1t33_A SCOP: predicted a.121.1
    HHSEARCH: PDB: 1t33_A SCOP: predicted a.121.1
    E.coli Annotations
    NCBI: 162135896 PORTECO PORAL: ybiH GeneExpDB: b0796

    Topsan Members

    Tag pages as 'PF09209' to appear in this list.

    Name Annotation Author(s)
    1t33

    Summary

    Pfam family
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    {Domain of unknown function (DUF1956) } with 113 members in NR database and additional 26 members in the metagenomic datasets is represented in Bacteria. The first structural representative solved (PDB Id:
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    ) was subject to FATCAT structural similarity search that indicated similarity to SCOP (v. 1.73) domain
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    classified as Two domains: DNA/RNA-binding 3-helical bundle and Tetracyclin repressor-like, C-terminal domain fold. Profile-profile methods confirm remote homology between this family and superfamily of Tetracyclin repressor-like, C-terminal domain; fold of the same name. Based on remote homology confirmed by the structure one can hypothesize that this family is probably binds nucleic acids

    Reviews

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