.
The Open Protein Structure Annotation Network
PDB Keyword
.

PF09183

    Table of contents
    1. 1. Topsan Members
    2. 2. Summary

    HTTP Status: UnableToConnect(0) (click for details)
    HTTP Status: UnableToConnect(0) (click for details)
      

    Resources
    Pfam ID: DUF1947 PDB: 1q7h_A
    Solved by: MCSG Priority Score: 2.6
    Member of this family is in PDB.
    Co-occurence with annotated domain(s) in one architecture.
    HMMER:
      # sequence matches: 18 # architectures: 2 # taxonomy ids:14
    FFAS:
      Top FFAS hit in PDB: "1q7hA, conserved hypothetical protein" No significant hits in Pfam.
    GRDB:
      Top significant hit (PDB90): "1q7hA, structural genomics, unknown function ; structure of a conserved hypothetical protein from t. acidophilum "
    CATH: CATH Domain E-value CATH Node
      3d79A01 3.90E-06
      1q7hA01 4.50E-21 3.10.450.120
    PUBSERVER:
      Publications(s) found: 11
      Publications(s) meeting filtering criteria: 0
    GeneSilico Metaserver: (Login and password: Jamboree)
    PHYRE: PDB: 1q7h_A SCOP: d.17.6.2 ECC: predicted 2.7.-.-
    PRC: PDB: 1q7h_A SCOP: predicted b.122.1 ECC: predicted 2.7.-.-
    HHBLITS: PDB: 1q7h_A SCOP: predicted b.122.1 ECC: predicted 2.7.-.-
    COMPASS: PDB: 1q7h_A SCOP: predicted b.122.1 ECC: predicted 2.7.-.-
    HHSEARCH: PDB: 1q7h_A SCOP: predicted b.122.1 ECC: predicted 2.7.-.-

    Topsan Members

    Tag pages as 'PF09183' to appear in this list.

    Name Annotation Author(s)
    1q7h

    Summary

    Pfam family PFAM:PF09183 {Domain of unknown function (DUF1947)} with 7 members in NR database and additional 3 members in the metagenomic datasets is represented in Archaea. The first structural representative solved (PDB Id: TOPSAN:1q7h) was subject to FATCAT structural similarity search that indicated similarity to SCOP (v. 1.73) domain SCOP:d1iq8a4 classified as PUA domain-like fold. Based on marginal prediction from FFAS confirmed by structural similarity one can argue that this family is remotely homologous to previously known structures from 'd1iq8a4' this fold. Based on fold and evidence of homology one can hypothesize that this family is probably binds RNA

    Reviews

    References

     

    No references found.

    Tag page

    Files (0)

     
    You must login to post a comment.
    All content on this site is licensed under a Creative Commons Attribution 3.0 License
    Powered by MindTouch