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PF09155

    Table of contents
    1. 1. Topsan Members
    2. 2. Summary
    3. 3. References

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    Resources
    Pfam ID: DUF1940 PDB: 1nig_A
    Solved by: MCSG Priority Score: 1.6
    Member of this family is in PDB.
    HMMER:
      # sequence matches: 3 # architectures: 1 # taxonomy ids:3
    FFAS:
      Top FFAS hit in PDB: "1nigA, hypothetical protein TA1238" No significant hits in Pfam.
    GRDB:
      Top significant hit (PDB90): "1nigA, structural genomics, unknown function ; 2.0 a structure of hypothetical protein from thermoplasma acidophilum "
    CATH: CATH Domain E-value CATH Node
      3ci3A01 0.006 1.20.1200.10
    PUBSERVER:
      Publications(s) found: 4
      Publications(s) meeting filtering criteria: 1
    GeneSilico Metaserver: (Login and password: Jamboree)
    PDBBLAST: PDB: 1nig_A SCOP: a.25.2.1
    FFAS: PDB: 1nig_A SCOP: a.25.2.1
    MGENTHREADER: PDB: 1nig_A SCOP: a.25.2.1
    PRC: PDB: 1nig_A SCOP: a.25.2.1
    SPARKS: PDB: 1nig_A SCOP: a.25.2.1
    BLASTP: PDB: 1nig_A SCOP: a.25.2.1
    HHBLITS: PDB: 1rty_A SCOP: a.25.2.2
    COMPASS: PDB: 1nig_A SCOP: a.25.2.1
    CSBLAST: PDB: 1nig_A SCOP: a.25.2.1
    HHSEARCH: PDB: 1nig_A SCOP: a.25.2.1

    Topsan Members

    Tag pages as 'PF09155' to appear in this list.

    Name Annotation Author(s)
    1nig

    Summary

    Pfam family
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    {Domain of unknown function (DUF1940)} with 3 members in NR database and additional 4 members in the metagenomic datasets is represented in Archaea. The first structural representative solved (PDB Id:
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    ) was subject to FATCAT structural similarity search that indicated similarity to SCOP (v. 1.73) domain
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    classified as Ferritin-like fold. However, no sequence similarity to this fold has been detected. Based on sequence and structure analysis/ original paper one can hypothesize that this family is probably involved in cobalamin biosyntheses

    Reviews

    References

     

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