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PDB Keyword
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PF09148

    Table of contents
    1. 1. Topsan Members
    2. 2. Summary

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    Resources
    Pfam ID: DUF1934 PDB: 1r0u_A
    Solved by: MCSG Priority Score: 1.6
    Member of this family is in PDB.
    HMMER:
      # sequence matches: 503 # architectures: 1 # taxonomy ids:311
    FFAS:
      Top FFAS hit in PDB: "1r0uA, protein ywiB" No significant hits in Pfam.
    GRDB:
      Top significant hit (PDB90): "1r0uA, structural genomics, unknown function ; crystal structure of ywib protein from bacillus subtilis "
    CATH: CATH Domain E-value CATH Node
      1r0uA00 2.50E-40 2.40.128.20
    PUBSERVER:
      Publications(s) found: 259
      Publications(s) meeting filtering criteria: 0
    GeneSilico Metaserver: (Login and password: Jamboree)
    PDBBLAST: PDB: 1r0u_A SCOP: b.60.1.5
    FFAS: PDB: 1r0u_A SCOP: b.60.1.5
    MGENTHREADER: PDB: 1r0u_A SCOP: b.60.1.5
    PRC: PDB: 1r0u_A SCOP: b.60.1.5
    SPARKS: PDB: 1r0u_A SCOP: b.60.1.5
    BLASTP: PDB: 1r0u_A SCOP: b.60.1.5
    HHBLITS: PDB: 1r0u_A SCOP: b.60.1.5
    COMPASS: PDB: 1r0u_A SCOP: b.60.1.5
    COMA: PDB: 1r0u_A SCOP: b.60.1.5
    CSBLAST: PDB: 1r0u_A SCOP: b.60.1.5
    HHSEARCH: PDB: 1r0u_A SCOP: b.60.1.5

    Topsan Members

    Tag pages as 'PF09148' to appear in this list.

    Name Annotation Author(s)
    1r0u

    Summary

    Pfam family PFAM:PF09148 {Domain of unknown function (DUF1934)} with 123 members in NR database and additional 2 members in the metagenomic datasets is represented in Bacteria. The first structural representative solved (PDB Id: TOPSAN:1r0u) was subject to FATCAT structural similarity search that indicated similarity to SCOP (v. 1.73) domain SCOP:d1ifca_ classified as Lipocalins fold. However, no sequence similarity to this fold has been detected. Based on fold one can hypothesize that this family is probably binds hydrophobic ligands

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