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PDB Keyword
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PF09011

    Table of contents
    1. 1. Topsan Members
    2. 2. Summary

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    Resources
    Pfam ID: DUF1898 PDB: 1aab_A
    Solved by: RSGI Priority Score: 4.6
    Member of this family is in PDB.
    Member of this clan is in PDB.
    Co-occurence with annotated domain(s) (no restrictions on number of architectures).
    HMMER:
      # sequence matches: 4263 # architectures: 80 # taxonomy ids:828
    FFAS:
      Top FFAS hit in PDB: "2ctoA, novel protein" Top FFAS hit in Pfam: "PF00505, HMG (high mobility group) box "
    GRDB:
      Top significant hit (PDB90): "1j3xA, dna binding protein ; solution structure of the n-terminal domain of the hmgb2 "
      Top significant hit (PFAM25U): "PF00505, HMG (high mobility group) box"
    CATH: CATH Domain E-value CATH Node
      1wgfA01 3.60E-11
      3fghA00 4.70E-14 1.10.30.10
    FUNFAM (eval=0 ): High mobility group protein homolog TDP-1 -like
    PUBSERVER:
      Publications(s) found: 68
      Publications(s) meeting filtering criteria: 13
    GeneSilico Metaserver: (Login and password: Jamboree)
    PDBBLAST: PDB: 1ckt_A SCOP: a.21.1.1
    FFAS: PDB: 1j3x_A SCOP: a.21.1.1
    MGENTHREADER: PDB: 1ckt_A SCOP: a.21.1.1
    PRC: PDB: 1v64_A SCOP: a.21.1.1 ECC: predicted 2.8.-.-
    BLASTP: PDB: 1ckt_A SCOP: a.21.1.1
    HHBLITS: PDB: 3f27_D SCOP: predicted a.21.1.1
    COMPASS: PDB: 2cs1_A SCOP: predicted a.21.1.1
    COMA: PDB: 1wgf_A SCOP: a.21.1.1 ECC: predicted 2.8.-.-
    CSBLAST: PDB: 1ckt_A SCOP: a.21.1.1
    HHSEARCH: PDB: 2co9_A SCOP: predicted a.21.1.1

    Topsan Members

    Tag pages as 'PF09011' to appear in this list.

    No TOPSAN member(s) found.

    Summary

    This is a HMG-box (High Mobility Group box) domain which is involved in DNA binding.

    Reviews

    References

     

    No references found.

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