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PDB Keyword
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PF09001

    Table of contents
    1. 1. Topsan Members
    2. 2. Summary

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    Resources
    Pfam ID: DUF1890 PDB: 1kjn_A
    Solved by: MCSG Priority Score: 1.6
    Member of this family is in PDB.
    HMMER:
      # sequence matches: 31 # architectures: 1 # taxonomy ids:26
    FFAS:
      Top FFAS hit in PDB: "1kjnA, MTH0777" No significant hits in Pfam.
    GRDB:
      Top significant hit (PDB90): "1kjnA, structural genomics, unknown function ; structure of mt0777 "
    CATH: CATH Domain E-value CATH Node
      1kjnA00 2.70E-50 3.40.50.10160
    PUBSERVER:
      Publications(s) found: 18
      Publications(s) meeting filtering criteria: 0
    GeneSilico Metaserver: (Login and password: Jamboree)
    PDBBLAST: PDB: 1kjn_A SCOP: c.115.1.1
    FFAS: PDB: 1kjn_A SCOP: c.115.1.1
    MGENTHREADER: PDB: 1kjn_A SCOP: c.115.1.1
    PRC: PDB: 1kjn_A SCOP: c.115.1.1
    SPARKS: PDB: 1kjn_A SCOP: c.115.1.1
    BLASTP: PDB: 1kjn_A SCOP: c.115.1.1
    HHBLITS: PDB: 1kjn_A SCOP: c.115.1.1
    COMPASS: PDB: 1kjn_A SCOP: c.115.1.1
    COMA: PDB: 1kjn_A SCOP: c.115.1.1
    CSBLAST: PDB: 1kjn_A SCOP: c.115.1.1
    HHSEARCH: PDB: 1kjn_A SCOP: c.115.1.1

    Topsan Members

    Tag pages as 'PF09001' to appear in this list.

    Name Annotation Author(s)
    1kjn

    Summary

    Pfam family PFAM:PF09001 {Domain of unknown function (DUF1890)} with 17 members in NR database and additional 2 members in the metagenomic datasets is represented in Archaea. The first structural representative solved (PDB Id: TOPSAN:1kjn) was subject to FATCAT structural similarity search that indicated similarity to SCOP (v. 1.73) domain SCOP:d1hi9a_ classified as Hypothetical protein MTH777 (MT0777); similar to NAD(P)-binding Rossmann-fold domains fold. (Note: new fold solved by PSI). However, this partial similarity is not sufficient for fold assignment. Thus it is a novel fold.

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