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PF08985

    Table of contents
    1. 1. Topsan Members
    2. 2. Summary

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    Resources
    Pfam ID: DUF1888 PDB: 3n55_A
    Solved by: MCSG Priority Score: 1.6
    Member of this family is in PDB.
    HMMER:
      # sequence matches: 17 # architectures: 1 # taxonomy ids:10
    FFAS:
      Top FFAS hit in PDB: "3njiA, Peptidase" No significant hits in Pfam.
    GRDB:
      Top significant hit (PDB90): "3njhA, hydrolase ; d37a mutant of so1698 protein, an aspartic peptidase from shewanella oneidensis. "
    CATH: CATH Domain E-value CATH Node
      3n55A00 4.60E-44 2.60.40.420
    PUBSERVER:
      Publications(s) found: 7
      Publications(s) meeting filtering criteria: 0
    GeneSilico Metaserver: (Login and password: Jamboree)
    PDBBLAST: PDB: 3njn_A
    FFAS: PDB: 3n55_A
    MGENTHREADER: PDB: 2ai4_A SCOP: predicted b.6.1 ECC: predicted -.-.-.-
    BLASTP: PDB: 3njn_A
    HHBLITS: PDB: 3njn_A
    COMPASS: PDB: 2ai4_A SCOP: predicted b.6.1 ECC: predicted -.-.-.-
    CSBLAST: PDB: 3njn_A
    HHSEARCH: PDB: 3njn_A

    Topsan Members

    Tag pages as 'PF08985' to appear in this list.

    Name Annotation Author(s)
    3njf

    Summary

    Pfam family PFAM:PF08985 {Domain of unknown function (DUF1888) } with 15 members in NR database and additional 5 members in the metagenomic datasets is represented in Bacteria. The first structural representative solved (PDB Id: TOPSAN:2ai4) was subject to FATCAT structural similarity search that indicated similarity to SCOP (v. 1.73) domain SCOP:d1v54b1 classified as Cupredoxin-like fold. Based on marginal prediction from FFAS confirmed by structural similarity one can argue that this family is remotely homologous to previously known structures from 'd1v54b1' this fold.

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