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PF08984

    Table of contents
    1. 1. Topsan Members
    2. 2. Summary

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    Pfam ID: DUF1858 PDB: 2fi0_A
    Solved by: MCSG Priority Score: 3.6
    Member of this family is in PDB.
    Co-occurence with annotated domain(s) (no restrictions on number of architectures).
    HMMER:
      # sequence matches: 576 # architectures: 24 # taxonomy ids:302
    FFAS:
      Top FFAS hit in PDB: "2fi0A, conserved domain protein" Top FFAS hit in Pfam: "PF04405, Domain of Unknown function (DUF542) "
    GRDB:
      Top significant hit (PDB90): "2fi0A, structural genomics, unknown function ; the crystal structure of the conserved domain protein from streptococcus pneumoniae tigr4 "
      Top significant hit (PFAM25U): "PF04405, Domain of Unknown function (DUF542)"
    CATH: CATH Domain E-value CATH Node
      2fi0A00 3.00E-17 1.10.3910.10
      2k53A00 5.20E-12
    PUBSERVER:
      Publications(s) found: 92
      Publications(s) meeting filtering criteria: 0
    GeneSilico Metaserver: (Login and password: Jamboree)
    PDBBLAST: PDB: 2fi0_A SCOP: predicted a.248.1.1
    FFAS: PDB: 2k53_A SCOP: predicted a.248.1.1
    MGENTHREADER: PDB: 2k53_A SCOP: predicted a.248.1.1
    PRC: PDB: 2fi0_A SCOP: predicted a.248.1.1
    HHBLITS: PDB: 2k5e_A SCOP: predicted a.248.1.1
    COMPASS: PDB: 2k5e_A SCOP: predicted a.248.1.1
    HHSEARCH: PDB: 2k5e_A SCOP: predicted a.248.1.1

    Topsan Members

    Tag pages as 'PF08984' to appear in this list.

    Name Annotation Author(s)
    2fi0

    Summary

    Pfam family PFAM:PF08984 {Domain of unknown function (DUF1858)} with 109 members in NR database and additional 11 members in the metagenomic datasets is represented in Archaea, and Bacteria. The first structural representative solved (PDB Id: TOPSAN:2fi0) was subject to FATCAT structural similarity search that yielded no results, thus suggesting that it is a novel fold.

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