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PDB Keyword
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PF08982

    Table of contents
    1. 1. Topsan Members
    2. 2. Summary

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    Resources
    Pfam ID: DUF1857 PDB: 2ffs_A
    Solved by: MCSG Priority Score: 2.6
    Member of this family is in PDB.
    Member of this clan is in PDB.
    HMMER:
      # sequence matches: 100 # architectures: 4 # taxonomy ids:72
    FFAS:
      Top FFAS hit in PDB: "2ffsA, hypothetical protein PA1206" Top FFAS hit in Pfam: "PF10604, Polyketide cyclase / dehydrase and lipid transport "
    GRDB:
      Top significant hit (PDB90): "2ffsA, structural genomics, unknown function ; structure of pr10-allergen-like protein pa1206 from pseudomonas aeruginosa pao1 "
      Top significant hit (PFAM25U): "PF10604, Polyketide cyclase / dehydrase and lipid transport"
    CATH: CATH Domain E-value CATH Node
      2d4rB00 0.00028
      2ffsA00 1.20E-53 3.30.530.20
    PUBSERVER:
      Publications(s) found: 74
      Publications(s) meeting filtering criteria: 0
    GeneSilico Metaserver: (Login and password: Jamboree)
    PDBBLAST: PDB: 2ffs_A SCOP: predicted d.129.3.7
    FFAS: PDB: 2ffs_A SCOP: predicted d.129.3.7
    MGENTHREADER: PDB: 2ffs_A SCOP: predicted d.129.3.7
    PRC: PDB: 2ffs_A SCOP: predicted d.129.3.7
    BLASTP: PDB: 2ffs_A SCOP: predicted d.129.3.7
    HHBLITS: PDB: 2ffs_A SCOP: predicted d.129.3.7
    COMPASS: PDB: 2ffs_A SCOP: predicted d.129.3.7
    COMA: PDB: 2ffs_A SCOP: predicted d.129.3.7
    CSBLAST: PDB: 2ffs_A SCOP: predicted d.129.3.7
    HHSEARCH: PDB: 2ffs_A SCOP: predicted d.129.3.7

    Topsan Members

    Tag pages as 'PF08982' to appear in this list.

    Name Annotation Author(s)
    2ffs

    Summary

    Pfam family PFAM:PF08982 {Domain of unknown function (DUF1857)} with 53 members in NR database and additional 7 members in the metagenomic datasets is represented in Bacteria, and Eukaryota. The first structural representative solved (PDB Id: TOPSAN:2ffs) was subject to FATCAT structural similarity search that indicated similarity to SCOP (v. 1.73) domain SCOP:d1ifva_ classified as TBP-like fold. Profile-profile methods confirm remote homology between this family and superfamily of Bet v1-like; TBP-like fold.

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