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The Open Protein Structure Annotation Network
PDB Keyword
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PF08980

    Table of contents
    1. 1. Topsan Members
    2. 2. Summary

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    Pfam ID: DUF1883 PDB: 2b1y_A
    Solved by: MCSG Priority Score: 2.6
    Member of this family is in PDB.
    Co-occurence with annotated domain(s) (no restrictions on number of architectures).
    HMMER:
      # sequence matches: 75 # architectures: 3 # taxonomy ids:49
    FFAS:
      Top FFAS hit in PDB: "2b1yA, hypothetical protein Atu1913" Top FFAS hit in Pfam: "PF01835, MG2 domain "
    GRDB:
      Top significant hit (PDB90): "2b1yA, unknown function ; crystal structure of hypothetical protein atu1913 from agrobacterium tumefaciens str. c58 "
    CATH: CATH Domain E-value CATH Node
      2b1yA00 3.20E-30 4.10.1210.10
    PUBSERVER:
      Publications(s) found: 67
      Publications(s) meeting filtering criteria: 0
    GeneSilico Metaserver: (Login and password: Jamboree)
    PDBBLAST: PDB: 2b1y_A SCOP: predicted b.156.1.1
    FFAS: PDB: 2b1y_A SCOP: predicted b.156.1.1
    MGENTHREADER: PDB: 2b1y_A SCOP: predicted b.156.1.1
    PRC: PDB: 2b1y_A SCOP: predicted b.156.1.1
    BLASTP: PDB: 2b1y_A SCOP: predicted b.156.1.1
    HHBLITS: PDB: 2b1y_A SCOP: predicted b.156.1.1
    COMPASS: PDB: 2b1y_A SCOP: predicted b.156.1.1
    CSBLAST: PDB: 2b1y_A SCOP: predicted b.156.1.1
    HHSEARCH: PDB: 2b1y_A SCOP: predicted b.156.1.1

    Topsan Members

    Tag pages as 'PF08980' to appear in this list.

    Name Annotation Author(s)
    2b1y

    Summary

    Pfam family PFAM:PF08980 {Domain of unknown function (DUF1883) } with 28 members in NR database and additional 3 members in the metagenomic datasets is represented in Bacteria. The first structural representative solved (PDB Id: TOPSAN:2b1y) was subject to FATCAT structural similarity search that yielded no results, thus suggesting that it is a novel fold.

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