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PDB Keyword
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PF08974

    Table of contents
    1. 1. Topsan Members
    2. 2. Summary

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    Pfam ID: DUF1877 PDB: 1ryl_A
    Solved by: MCSG Priority Score: 1.6
    Member of this family is in PDB.
    HMMER:
      # sequence matches: 191 # architectures: 3 # taxonomy ids:115
    FFAS:
      Top FFAS hit in PDB: "1rylA, Hypothetical protein yfbM" No significant hits in Pfam.
    GRDB:
      Top significant hit (PDB90): "1rylA, structural genomics, unknown function ; structural genomics,the crystal structure of a hypothetical protein yfbm from e. coli "
    CATH: CATH Domain E-value CATH Node
      1rylA00 1.20E-46 3.40.1760.10
    PUBSERVER:
      Publications(s) found: 235
      Publications(s) meeting filtering criteria: 0
    GeneSilico Metaserver: (Login and password: Jamboree)
    PDBBLAST: PDB: 1ryl_A SCOP: d.276.1.1
    FFAS: PDB: 1ryl_A SCOP: d.276.1.1
    MGENTHREADER: PDB: 1ryl_A SCOP: d.276.1.1
    PRC: PDB: 1ryl_A SCOP: d.276.1.1
    SPARKS: PDB: 1ryl_A SCOP: d.276.1.1
    BLASTP: PDB: 1ryl_A SCOP: d.276.1.1
    HHBLITS: PDB: 1ryl_A SCOP: d.276.1.1
    COMPASS: PDB: 1ryl_A SCOP: d.276.1.1
    COMA: PDB: 1ryl_A SCOP: d.276.1.1
    CSBLAST: PDB: 1ryl_A SCOP: d.276.1.1
    HHSEARCH: PDB: 1ryl_A SCOP: d.276.1.1
    E.coli Annotations
    NCBI: 16130207 PORTECO PORAL: yfbM GeneExpDB: b2272

    Topsan Members

    Tag pages as 'PF08974' to appear in this list.

    Name Annotation Author(s)
    1ryl

    Summary

    Pfam family PFAM:PF08974 {Domain of unknown function (DUF1877) } with 34 members in NR database and additional 2 members in the metagenomic datasets is represented in Bacteria. The first structural representative solved (PDB Id: TOPSAN:1ryl) was subject to FATCAT structural similarity search that yielded no results, thus suggesting that it is a novel fold.

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