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PF08965

    Table of contents
    1. 1. Topsan Members
    2. 2. Summary

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    Resources
    Pfam ID: DUF1870 PDB: 1s4k_A
    Solved by: MCSG Priority Score: 2.6
    Member of this family is in PDB.
    Member of this clan is in PDB.
    HMMER:
      # sequence matches: 88 # architectures: 6 # taxonomy ids:26
    FFAS:
      Top FFAS hit in PDB: "1s4kA, putative cytoplasmic protein ydil" Top FFAS hit in Pfam: "PF13560, Helix-turn-helix domain "
    GRDB:
      Top significant hit (PDB90): "1s4kA, structural genomics, unknown function ; putative cytoplasmic protein from salmonella typhimurium "
      Top significant hit (PFAM25U): "PF13560, Helix-turn-helix domain"
    CATH: CATH Domain E-value CATH Node
      3fmyA00 0.00029
      2ppxA00 0.0029 1.10.260.40
      1s4kA00 2.20E-42 1.10.3100.10
    FUNFAM (eval=0.0000029 ): Modification methylase ScrFIA -like
    PUBSERVER:
      Publications(s) found: 204
      Publications(s) meeting filtering criteria: 1
    GeneSilico Metaserver: (Login and password: Jamboree)
    PDBBLAST: PDB: 1s4k_A SCOP: a.35.1.6
    FFAS: PDB: 1s4k_A SCOP: a.35.1.6
    MGENTHREADER: PDB: 1s4k_A SCOP: a.35.1.6
    PRC: PDB: 1s4k_A SCOP: a.35.1.6
    SPARKS: PDB: 1s4k_A SCOP: a.35.1.6
    BLASTP: PDB: 1s4k_A SCOP: a.35.1.6
    HHBLITS: PDB: 1s4k_A SCOP: a.35.1.6
    COMPASS: PDB: 1s4k_A SCOP: a.35.1.6
    COMA: PDB: 1s4k_A SCOP: a.35.1.6
    CSBLAST: PDB: 1s4k_A SCOP: a.35.1.6
    HHSEARCH: PDB: 1s4k_A SCOP: a.35.1.6
    E.coli Annotations
    NCBI: 90111316 PORTECO PORAL: ydiL GeneExpDB: b1689

    Topsan Members

    Tag pages as 'PF08965' to appear in this list.

    Name Annotation Author(s)
    1s4k

    Summary

    Pfam family PFAM:PF08965 {Domain of unknown function (DUF1870) } with 19 members in NR database. The first structural representative solved (PDB Id: TOPSAN:1s4k) was subject to FATCAT structural similarity search that indicated similarity to SCOP (v. 1.73) domain SCOP:d1b0na2 classified as Lambda repressor-like DNA-binding domains fold. Based on marginal prediction from FFAS confirmed by structural similarity one can argue that this family is remotely homologous to previously known structures from 'd1b0na2' this fold. Based on fold and evidence of homology one can hypothesize that this family is probably binds DNA, may be involved in regulation

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