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PF08922

    Table of contents
    1. 1. Topsan Members
    2. 2. Summary

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    Resources
    Pfam ID: DUF1905 PDB: 2d9r_A
    Solved by: MCSG Priority Score: 2.6
    Member of this family is in PDB.
    Co-occurence with annotated domain(s) (no restrictions on number of architectures).
    HMMER:
      # sequence matches: 262 # architectures: 7 # taxonomy ids:154
    FFAS:
      Top FFAS hit in PDB: "2d9rA, conserved hypothetical protein" No significant hits in Pfam.
    GRDB:
      Top significant hit (PDB90): "2d9rA, structural genomics, unknown function ; conserved hypothetical protein pg0164 frpm porphyromonas gingivalis [w83] "
    CATH: CATH Domain E-value CATH Node
      2d9rA00 7.50E-21 2.40.30.100
    PUBSERVER:
      Publications(s) found: 76
      Publications(s) meeting filtering criteria: 0
    GeneSilico Metaserver: (Login and password: Jamboree)
    PDBBLAST: PDB: 2d9r_A SCOP: predicted b.129.2.1
    FFAS: PDB: 2d9r_A SCOP: predicted b.129.2.1
    MGENTHREADER: PDB: 2d9r_A SCOP: predicted b.129.2.1
    PRC: PDB: 2d9r_A SCOP: predicted b.129.2.1
    BLASTP: PDB: 2d9r_A SCOP: predicted b.129.2.1
    HHBLITS: PDB: 2d9r_A SCOP: predicted b.129.2.1
    COMPASS: PDB: 2d9r_A SCOP: predicted b.129.2.1
    CSBLAST: PDB: 2d9r_A SCOP: predicted b.129.2.1
    HHSEARCH: PDB: 2d9r_A SCOP: predicted b.129.2.1

    Topsan Members

    Tag pages as 'PF08922' to appear in this list.

    Name Annotation Author(s)
    2d9r

    Summary

    Pfam family PFAM:PF08922 {Domain of unknown function (DUF1905) } with 84 members in NR database and additional 58 members in the metagenomic datasets is represented in Archaea, and Bacteria. The first structural representative solved (PDB Id: TOPSAN:2d9r) was subject to FATCAT structural similarity search that indicated similarity to SCOP (v. 1.73) domain SCOP:d1n0ea_ classified as Double-split beta-barrel fold. However, no sequence similarity to this fold has been detected. Based on fold one can hypothesize that this family is probably binds DNA

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