The Open Protein Structure Annotation Network
PDB Keyword


    Table of contents
    1. 1. Topsan Members
    2. 2. Summary

    HTTP Status: UnableToConnect(0) (click for details)
    HTTP Status: UnableToConnect(0) (click for details)

    Pfam ID: DUF1904 PDB: 1u9d_A
    Solved by: MCSG Priority Score: 2.6
    Member of this family is in PDB.
    Member of this clan is in PDB.
      # sequence matches: 149 # architectures: 3 # taxonomy ids:88
      Top FFAS hit in PDB: "1u9dA, hypothetical protein VC0714" Top FFAS hit in Pfam: "PF01187, Macrophage migration inhibitory factor (MIF) "
      Top significant hit (PDB90): "1u9dA, structural genomics, unknown function ; hypothetical protein from vibrio cholerae o1 biovar eltor str. n16961 "
      Top significant hit (PFAM25U): "PF01187, Macrophage migration inhibitory factor (MIF)"
    CATH: CATH Domain E-value CATH Node
      2aalF00 0.00034
      1mwwB00 0.0065 3.30.429.10
    FUNFAM (eval=0.0047 ): 4-oxalocrotonate tautomerase -like
      Publications(s) found: 47
      Publications(s) meeting filtering criteria: 0
    GeneSilico Metaserver: (Login and password: Jamboree)
    FFAS: PDB: 1u9d_A SCOP: d.80.1.5
    PHYRE: PDB: 1u9d_A SCOP: d.80.1.5
    PRC: PDB: 1u9d_A SCOP: d.80.1.5
    SPARKS: PDB: 1u9d_A SCOP: d.80.1.5
    HHBLITS: PDB: 1u9d_A SCOP: d.80.1.5
    COMPASS: PDB: 1u9d_A SCOP: d.80.1.5
    COMA: PDB: 1u9d_A SCOP: d.80.1.5
    HHSEARCH: PDB: 1u9d_A SCOP: d.80.1.5

    Topsan Members

    Tag pages as 'PF08921' to appear in this list.

    Name Annotation Author(s)


    Pfam family PFAM:PF08921 {Domain of unknown function (DUF1904) } with 35 members in NR database and additional 1 members in the metagenomic datasets is represented in Bacteria. The first structural representative solved (PDB Id: TOPSAN:1u9d) was subject to FATCAT structural similarity search that indicated similarity to SCOP (v. 1.73) domain SCOP:d1mwwa_ classified as Tautomerase/MIF fold. Profile-profile methods confirm remote homology between this family and superfamily of Tautomerase/MIF; fold of the same name.




    No references found.

    Tag page

    Files (0)

    You must login to post a comment.
    All content on this site is licensed under a Creative Commons Attribution 3.0 License
    Powered by MindTouch