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PDB Keyword
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PF08838

    Table of contents
    1. 1. Topsan Members
    2. 2. Summary

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    Resources
    Pfam ID: DUF1811 PDB: 1sf9_A
    Solved by: MCSG Priority Score: 1.6
    Member of this family is in PDB.
    HMMER:
      # sequence matches: 94 # architectures: 1 # taxonomy ids:51
    FFAS:
      Top FFAS hit in PDB: "2yxyA, Hypothetical conserved protein, GK0453" No significant hits in Pfam.
    GRDB:
      Top significant hit (PDB90): "1sf9A, structural genomics, unknown function ; crystal structure of bacillus subtilis yfhh hypothetical protein "
    CATH: CATH Domain E-value CATH Node
      1sf9A01 2.80E-17 1.10.287.880
      1sf9A02 1.90E-14 2.30.30.340
    PUBSERVER:
      Publications(s) found: 108
      Publications(s) meeting filtering criteria: 0
    GeneSilico Metaserver: (Login and password: Jamboree)
    PDBBLAST: PDB: 2yxy_A SCOP: predicted b.34.15.1
    FFAS: PDB: 2yxy_A SCOP: predicted b.34.15.1
    MGENTHREADER: PDB: 2yxy_A SCOP: predicted b.34.15.1
    PRC: PDB: 1sf9_A SCOP: b.34.15.1
    SPARKS: PDB: 1sf9_A SCOP: b.34.15.1
    BLASTP: PDB: 2yxy_A SCOP: predicted b.34.15.1
    HHBLITS: PDB: 2yxy_A SCOP: predicted b.34.15.1
    COMPASS: PDB: 1sf9_A SCOP: b.34.15.1
    CSBLAST: PDB: 2yxy_A SCOP: predicted b.34.15.1
    HHSEARCH: PDB: 2yxy_A SCOP: predicted b.34.15.1

    Topsan Members

    Tag pages as 'PF08838' to appear in this list.

    Name Annotation Author(s)
    1sf9

    Summary

    Pfam family PFAM:PF08838 {Protein of unknown function (DUF1811) } with 39 members in NR database. The first structural representative solved (PDB Id: TOPSAN:1sf9) was subject to FATCAT structural similarity search that indicated similarity to SCOP (v. 1.73) domain SCOP:d1shfa_ classified as SH3-like barrel fold. Based on prediction by HHpred (confirmed by the structure) links it to PF08239 that has SH3-like barrel fold one can argue that this family is remotely homologous to previously known structures from 'd1shfa_' this fold.

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