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PF08768

    Table of contents
    1. 1. Topsan Members
    2. 2. Summary

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    Resources
    Pfam ID: DUF1794 PDB: 2a13_A
    Solved by: CESG Priority Score: 3.6
    Member of this family is in PDB.
    Co-occurence with annotated domain(s) (no restrictions on number of architectures).
    HMMER:
      # sequence matches: 368 # architectures: 9 # taxonomy ids:230
    FFAS:
      Top FFAS hit in PDB: "2fwvA, hypothetical protein MtubF_01000852" Top FFAS hit in Pfam: "PF07617, Protein of unknown function (DUF1579) "
    GRDB:
      Top significant hit (PDB90): "2fwvA, structural genomics, unknown function ; crystal structure of rv0813 "
      Top significant hit (PFAM25U): "PF07617, Protein of unknown function (DUF1579)"
    CATH: CATH Domain E-value CATH Node
      2a13A00 3.30E-49
      1jvaB02 0.0048 3.10.28.10
    PUBSERVER:
      Publications(s) found: 199
      Publications(s) meeting filtering criteria: 5
    GeneSilico Metaserver: (Login and password: Jamboree)
    PDBBLAST: PDB: 2q4n_A SCOP: predicted b.60.1.8 ECC: predicted 2.8.-.-
    FFAS: PDB: 2fr2_A SCOP: predicted b.60.1.8
    PRC: PDB: 2a13_A SCOP: predicted b.60.1.8 ECC: predicted 2.8.-.-
    BLASTP: PDB: 2fwv_A SCOP: predicted b.60.1.8
    HHBLITS: PDB: 2fwv_A SCOP: predicted b.60.1.8
    COMPASS: PDB: 2a13_A SCOP: predicted b.60.1.8 ECC: predicted 2.8.-.-
    CSBLAST: PDB: 2q4n_A SCOP: predicted b.60.1.8 ECC: predicted 2.8.-.-
    HHSEARCH: PDB: 2fwv_A SCOP: predicted b.60.1.8

    Topsan Members

    Tag pages as 'PF08768' to appear in this list.

    Name Annotation Author(s)
    2a13

    Summary

    Pfam family
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    {Domain of unknown function (DUF1794) } with 239 members in NR database and additional 107 members in the metagenomic datasets is represented in Bacteria, and Eukaryota. The first structural representative solved (PDB Id:
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    ) was subject to FATCAT structural similarity search that indicated similarity to SCOP (v. 1.73) domain
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    classified as Lipocalins fold. Based on marginal prediction from FFAS confirmed by structural similarity one can argue that this family is remotely homologous to previously known structures from 'd1sa8a_' this fold.

    Reviews

    References

     

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