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PF08681

    Table of contents
    1. 1. Topsan Members
    2. 2. Summary

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    Resources
    Pfam ID: DUF1778 PDB: 1y9b_A
    Solved by: MCSG Priority Score: 2.6
    Member of this family is in PDB.
    Member of this clan is in PDB.
    HMMER:
      # sequence matches: 504 # architectures: 5 # taxonomy ids:223
    FFAS:
      Top FFAS hit in PDB: "1y9bA, conserved hypothetical protein" Top FFAS hit in Pfam: "PF01402, Ribbon-helix-helix protein, copG family "
    GRDB:
      Top significant hit (PDB90): "1y9bA, structural genomics, unknown function ; conserverd hypothetical protein from vibrio cholerae o1 biovar eltor str. n16961 "
    CATH: CATH Domain E-value CATH Node
      2an7A00 0.0064
      1y9bB01 2.50E-08 1.10.1220.10
      1y9bA00 3.70E-24 1.20.5.780
      1y9bB02 0.00015 1.20.890.30
    FUNFAM (eval=0 ): Putative uncharacterized protein -like
    PUBSERVER:
      Publications(s) found: 237
      Publications(s) meeting filtering criteria: 1
    GeneSilico Metaserver: (Login and password: Jamboree)
    PDBBLAST: PDB: 1y9b_A SCOP: predicted a.43.1.9
    FFAS: PDB: 1y9b_A SCOP: predicted a.43.1.9
    MGENTHREADER: PDB: 1y9b_A SCOP: predicted a.43.1.9
    PRC: PDB: 1y9b_A SCOP: predicted a.43.1.9
    HHBLITS: PDB: 1y9b_A SCOP: predicted a.43.1.9
    COMPASS: PDB: 1y9b_A SCOP: predicted a.43.1.9
    CSBLAST: PDB: 1y9b_A SCOP: predicted a.43.1.9
    HHSEARCH: PDB: 1y9b_A SCOP: predicted a.43.1.9

    Topsan Members

    Tag pages as 'PF08681' to appear in this list.

    Name Annotation Author(s)
    1y9b

    Summary

    Pfam family
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    {Protein of unknown function (DUF1778) } with 277 members in NR database and additional 84 members in the metagenomic datasets is represented in Bacteria, Eukaryota, and Viruses. The first structural representative solved (PDB Id:
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    ) was subject to FATCAT structural similarity search that indicated similarity to SCOP (v. 1.73) domain
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    classified as Ribbon-helix-helix fold. Based on marginal prediction from FFAS confirmed by structural similarity one can argue that this family is remotely homologous to previously known structures from 'd1u9pa1' this fold.

    Reviews

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