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PDB Keyword
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PF07515

    Table of contents
    1. 1. Topsan Members
    2. 2. Summary

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    Resources
    Pfam ID: DUF1528 PDB: 2ipq_X
    Solved by: NYSGXRC Priority Score: 2.6
    Member of this family is in PDB.
    Co-occurence with annotated domain(s) (no restrictions on number of architectures).
    HMMER:
      # sequence matches: 222 # architectures: 3 # taxonomy ids:79
    FFAS:
      Top FFAS hit in PDB: "2ipqX, Hypothetical protein STY4665" No significant hits in Pfam.
    GRDB:
      Top significant hit (PDB90): "2ipqX, structural genomics, unknown function ; crystal structure of c-terminal domain of salmonella enterica protein sty4665, pfam duf1528 "
    CATH: CATH Domain E-value CATH Node
      2ipqX02 5.00E-14 2.40.10.200
    PUBSERVER:
      Publications(s) found: 109
      Publications(s) meeting filtering criteria: 1
    GeneSilico Metaserver: (Login and password: Jamboree)
    PDBBLAST: PDB: 2ipq_X
    FFAS: PDB: 2ipq_X
    MGENTHREADER: PDB: 2ipq_X
    BLASTP: PDB: 2ipq_X
    HHBLITS: PDB: 2ipq_X
    COMPASS: PDB: 2ipq_X
    CSBLAST: PDB: 2ipq_X
    HHSEARCH: PDB: 2ipq_X

    Topsan Members

    Tag pages as 'PF07515' to appear in this list.

    Name Annotation Author(s)
    2ipq

    Summary

    Pfam family PFAM:PF07515 {Protein of unknown function (DUF1528) } with 89 members in NR database and additional 6 members in the metagenomic datasets is represented in Bacteria. The first structural representative solved (PDB Id: TOPSAN:2ipq) was subject to FATCAT structural similarity search that indicated similarity to SCOP (v. 1.73) domain SCOP:d1i5za1 classified as DNA/RNA-binding 3-helical bundle fold. However, no sequence similarity to this fold has been detected. Based on fold one can hypothesize that this family is probably binds nucleic acids

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