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PF07369

    Table of contents
    1. 1. Topsan Members
    2. 2. Summary

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    Resources
    Pfam ID: DUF1488 PDB: 2gpi_A
    Solved by: JCSG Priority Score: 0
    HMMER:
      # sequence matches: 386 # architectures: 1 # taxonomy ids:153
    FFAS:
      Top FFAS hit in PDB: "2gpiA, conserved hypothetical protein" No significant hits in Pfam.
    GRDB:
      Top significant hit (PDB90): "2gpiA, structural genomics, unknown function ; crystal structure of conserved hypothetical protein (zp_00837230.1) from shewanella sp. pv-4 at 1.60 a resolution "
    CATH: CATH Domain E-value CATH Node
      2gpiA00 1.20E-21 3.30.160.140
    PUBSERVER:
      Publications(s) found: 6
      Publications(s) meeting filtering criteria: 0
    GeneSilico Metaserver: (Login and password: Jamboree)
    PDBBLAST: PDB: 2gpi_A SCOP: d.354.1.1
    FFAS: PDB: 2gpi_A SCOP: d.354.1.1
    MGENTHREADER: PDB: 2gpi_A SCOP: d.354.1.1
    HHBLITS: PDB: 2gpi_A SCOP: d.354.1.1
    COMPASS: PDB: 2gpi_A SCOP: d.354.1.1
    CSBLAST: PDB: 2gpi_A SCOP: d.354.1.1
    HHSEARCH: PDB: 2gpi_A SCOP: d.354.1.1
    E.coli Annotations
    NCBI: 16131161 PORTECO PORAL: yrdB GeneExpDB: b3280

    Topsan Members

    Tag pages as 'PF07369' to appear in this list.

    Name Annotation Author(s)
    2gpi
    The Shew_3726 gene of Shewanella sp. PV-4 encodes the first structural representative of protein family PF07369 (DUF1488). The structure reveals a left-handed beta-sheet wrapped around a central helix... tinab (15 edits)
    pascual (1 edits)

    Summary

    Pfam family PFAM:PF07369 {Protein of unknown function (DUF1488) } with 154 members in NR database and additional 13 members in the metagenomic datasets is represented in Bacteria. The first structural representative solved (PDB Id: TOPSAN:2gpi) was subject to FATCAT structural similarity search that indicated similarity to SCOP (v. 1.73) domain SCOP:d1stua_ classified as Dsrbd-like fold. However, no sequence similarity to this fold has been detected.

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