reference to undefined name 'note' Exception of type 'MindTouch.Deki.Script.Runtime.DekiScriptUndefinedNameException' was thrown. (click for details)Callstack:
at Groups/PF07369
at Template:PfamFamily
MindTouch.Deki.Script.Runtime.DekiScriptUndefinedNameException: reference to undefined name 'note' Exception of type 'MindTouch.Deki.Script.Runtime.DekiScriptUndefinedNameException' was thrown.
at MindTouch.Deki.Script.Compiler.DekiScriptExpressionEvaluation.Visit (MindTouch.Deki.Script.Expr.DekiScriptVar expr, DekiScriptExpressionEvaluationState state) [0x00000] in <filename unknown>:0
at MindTouch.Deki.Script.Expr.DekiScriptVar.VisitWith[DekiScriptExpressionEvaluationState,Range] (IDekiScriptExpressionVisitor`2 visitor, DekiScriptExpressionEvaluationState state) [0x00000] in <filename unknown>:0
at MindTouch.Deki.Script.Compiler.DekiScriptExpressionEvaluation.Evaluate (MindTouch.Deki.Script.Expr.DekiScriptAccess expr, DekiScriptExpressionEvaluationState state, Boolean evaluateProperties) [0x00000] in <filename unknown>:0
at MindTouch.Deki.Script.Compiler.DekiScriptExpressionEvaluation.Visit (MindTouch.Deki.Script.Expr.DekiScriptAccess expr, DekiScriptExpressionEvaluationState state) [0x00000] in <filename unknown>:0
at MindTouch.Deki.Script.Expr.DekiScriptAccess.VisitWith[DekiScriptExpressionEvaluationState,Range] (IDekiScriptExpressionVisitor`2 visitor, DekiScriptExpressionEvaluationState state) [0x00000] in <filename unknown>:0
at MindTouch.Deki.Script.Compiler.DekiScriptExpressionEvaluation.Visit (MindTouch.Deki.Script.Expr.DekiScriptCall expr, DekiScriptExpressionEvaluationState state) [0x00000] in <filename unknown>:0
at MindTouch.Deki.Script.Expr.DekiScriptCall.VisitWith[DekiScriptExpressionEvaluationState,Range] (IDekiScriptExpressionVisitor`2 visitor, DekiScriptExpressionEvaluationState state) [0x00000] in <filename unknown>:0
at MindTouch.Deki.Script.Compiler.DekiScriptExpressionEvaluation.Visit (MindTouch.Deki.Script.Expr.DekiScriptReturnScope expr, DekiScriptExpressionEvaluationState state) [0x00000] in <filename unknown>:0
reference to undefined name 'note' Exception of type 'MindTouch.Deki.Script.Runtime.DekiScriptUndefinedNameException' was thrown. (click for details)Callstack:
at Groups/PF07369
at Template:PfamFamily
MindTouch.Deki.Script.Runtime.DekiScriptUndefinedNameException: reference to undefined name 'note' Exception of type 'MindTouch.Deki.Script.Runtime.DekiScriptUndefinedNameException' was thrown.
at MindTouch.Deki.Script.Compiler.DekiScriptExpressionEvaluation.Visit (MindTouch.Deki.Script.Expr.DekiScriptVar expr, DekiScriptExpressionEvaluationState state) [0x00000] in <filename unknown>:0
at MindTouch.Deki.Script.Expr.DekiScriptVar.VisitWith[DekiScriptExpressionEvaluationState,Range] (IDekiScriptExpressionVisitor`2 visitor, DekiScriptExpressionEvaluationState state) [0x00000] in <filename unknown>:0
at MindTouch.Deki.Script.Compiler.DekiScriptExpressionEvaluation.Evaluate (MindTouch.Deki.Script.Expr.DekiScriptAccess expr, DekiScriptExpressionEvaluationState state, Boolean evaluateProperties) [0x00000] in <filename unknown>:0
at MindTouch.Deki.Script.Compiler.DekiScriptExpressionEvaluation.Visit (MindTouch.Deki.Script.Expr.DekiScriptAccess expr, DekiScriptExpressionEvaluationState state) [0x00000] in <filename unknown>:0
at MindTouch.Deki.Script.Expr.DekiScriptAccess.VisitWith[DekiScriptExpressionEvaluationState,Range] (IDekiScriptExpressionVisitor`2 visitor, DekiScriptExpressionEvaluationState state) [0x00000] in <filename unknown>:0
at MindTouch.Deki.Script.Compiler.DekiScriptExpressionEvaluation.Visit (MindTouch.Deki.Script.Expr.DekiScriptCall expr, DekiScriptExpressionEvaluationState state) [0x00000] in <filename unknown>:0
at MindTouch.Deki.Script.Expr.DekiScriptCall.VisitWith[DekiScriptExpressionEvaluationState,Range] (IDekiScriptExpressionVisitor`2 visitor, DekiScriptExpressionEvaluationState state) [0x00000] in <filename unknown>:0
at MindTouch.Deki.Script.Compiler.DekiScriptExpressionEvaluation.Visit (MindTouch.Deki.Script.Expr.DekiScriptReturnScope expr, DekiScriptExpressionEvaluationState state) [0x00000] in <filename unknown>:0
reference to undefined name 'note' Exception of type 'MindTouch.Deki.Script.Runtime.DekiScriptUndefinedNameException' was thrown. (click for details)Callstack:
at Groups/PF07369
at Template:PfamFamily
MindTouch.Deki.Script.Runtime.DekiScriptUndefinedNameException: reference to undefined name 'note' Exception of type 'MindTouch.Deki.Script.Runtime.DekiScriptUndefinedNameException' was thrown.
at MindTouch.Deki.Script.Compiler.DekiScriptExpressionEvaluation.Visit (MindTouch.Deki.Script.Expr.DekiScriptVar expr, DekiScriptExpressionEvaluationState state) [0x00000] in <filename unknown>:0
at MindTouch.Deki.Script.Expr.DekiScriptVar.VisitWith[DekiScriptExpressionEvaluationState,Range] (IDekiScriptExpressionVisitor`2 visitor, DekiScriptExpressionEvaluationState state) [0x00000] in <filename unknown>:0
at MindTouch.Deki.Script.Compiler.DekiScriptExpressionEvaluation.Evaluate (MindTouch.Deki.Script.Expr.DekiScriptAccess expr, DekiScriptExpressionEvaluationState state, Boolean evaluateProperties) [0x00000] in <filename unknown>:0
at MindTouch.Deki.Script.Compiler.DekiScriptExpressionEvaluation.Visit (MindTouch.Deki.Script.Expr.DekiScriptAccess expr, DekiScriptExpressionEvaluationState state) [0x00000] in <filename unknown>:0
at MindTouch.Deki.Script.Expr.DekiScriptAccess.VisitWith[DekiScriptExpressionEvaluationState,Range] (IDekiScriptExpressionVisitor`2 visitor, DekiScriptExpressionEvaluationState state) [0x00000] in <filename unknown>:0
at MindTouch.Deki.Script.Compiler.DekiScriptExpressionEvaluation.Visit (MindTouch.Deki.Script.Expr.DekiScriptCall expr, DekiScriptExpressionEvaluationState state) [0x00000] in <filename unknown>:0
at MindTouch.Deki.Script.Expr.DekiScriptCall.VisitWith[DekiScriptExpressionEvaluationState,Range] (IDekiScriptExpressionVisitor`2 visitor, DekiScriptExpressionEvaluationState state) [0x00000] in <filename unknown>:0
at MindTouch.Deki.Script.Compiler.DekiScriptExpressionEvaluation.Evaluate (MindTouch.Deki.Script.Expr.DekiScriptAccess expr, DekiScriptExpressionEvaluationState state, Boolean evaluateProperties) [0x00000] in <filename unknown>:0
at MindTouch.Deki.Script.Compiler.DekiScriptExpressionEvaluation.Visit (MindTouch.Deki.Script.Expr.DekiScriptAccess expr, DekiScriptExpressionEvaluationState state) [0x00000] in <filename unknown>:0
at MindTouch.Deki.Script.Expr.DekiScriptAccess.VisitWith[DekiScriptExpressionEvaluationState,Range] (IDekiScriptExpressionVisitor`2 visitor, DekiScriptExpressionEvaluationState state) [0x00000] in <filename unknown>:0
at MindTouch.Deki.Script.Compiler.DekiScriptExpressionEvaluation.Visit (MindTouch.Deki.Script.Expr.DekiScriptAssign expr, DekiScriptExpressionEvaluationState state) [0x00000] in <filename unknown>:0
at MindTouch.Deki.Script.Expr.DekiScriptAssign.VisitWith[DekiScriptExpressionEvaluationState,Range] (IDekiScriptExpressionVisitor`2 visitor, DekiScriptExpressionEvaluationState state) [0x00000] in <filename unknown>:0
at MindTouch.Deki.Script.Compiler.DekiScriptExpressionEvaluation.Visit (MindTouch.Deki.Script.Expr.DekiScriptDiscard expr, DekiScriptExpressionEvaluationState state) [0x00000] in <filename unknown>:0
at MindTouch.Deki.Script.Expr.DekiScriptDiscard.VisitWith[DekiScriptExpressionEvaluationState,Range] (IDekiScriptExpressionVisitor`2 visitor, DekiScriptExpressionEvaluationState state) [0x00000] in <filename unknown>:0
at MindTouch.Deki.Script.Compiler.DekiScriptExpressionEvaluation.Visit (MindTouch.Deki.Script.Expr.DekiScriptSequence expr, DekiScriptExpressionEvaluationState state) [0x00000] in <filename unknown>:0
at MindTouch.Deki.Script.Expr.DekiScriptSequence.VisitWith[DekiScriptExpressionEvaluationState,Range] (IDekiScriptExpressionVisitor`2 visitor, DekiScriptExpressionEvaluationState state) [0x00000] in <filename unknown>:0
at MindTouch.Deki.Script.Compiler.DekiScriptExpressionEvaluation.Visit (MindTouch.Deki.Script.Expr.DekiScriptReturnScope expr, DekiScriptExpressionEvaluationState state) [0x00000] in <filename unknown>:0
reference to undefined name 'note' Exception of type 'MindTouch.Deki.Script.Runtime.DekiScriptUndefinedNameException' was thrown. (click for details)Callstack:
at Groups/PF07369
at Template:PfamFamily
MindTouch.Deki.Script.Runtime.DekiScriptUndefinedNameException: reference to undefined name 'note' Exception of type 'MindTouch.Deki.Script.Runtime.DekiScriptUndefinedNameException' was thrown.
at MindTouch.Deki.Script.Compiler.DekiScriptExpressionEvaluation.Visit (MindTouch.Deki.Script.Expr.DekiScriptVar expr, DekiScriptExpressionEvaluationState state) [0x00000] in <filename unknown>:0
at MindTouch.Deki.Script.Expr.DekiScriptVar.VisitWith[DekiScriptExpressionEvaluationState,Range] (IDekiScriptExpressionVisitor`2 visitor, DekiScriptExpressionEvaluationState state) [0x00000] in <filename unknown>:0
at MindTouch.Deki.Script.Compiler.DekiScriptExpressionEvaluation.Evaluate (MindTouch.Deki.Script.Expr.DekiScriptAccess expr, DekiScriptExpressionEvaluationState state, Boolean evaluateProperties) [0x00000] in <filename unknown>:0
at MindTouch.Deki.Script.Compiler.DekiScriptExpressionEvaluation.Visit (MindTouch.Deki.Script.Expr.DekiScriptAccess expr, DekiScriptExpressionEvaluationState state) [0x00000] in <filename unknown>:0
at MindTouch.Deki.Script.Expr.DekiScriptAccess.VisitWith[DekiScriptExpressionEvaluationState,Range] (IDekiScriptExpressionVisitor`2 visitor, DekiScriptExpressionEvaluationState state) [0x00000] in <filename unknown>:0
at MindTouch.Deki.Script.Compiler.DekiScriptExpressionEvaluation.Visit (MindTouch.Deki.Script.Expr.DekiScriptCall expr, DekiScriptExpressionEvaluationState state) [0x00000] in <filename unknown>:0
at MindTouch.Deki.Script.Expr.DekiScriptCall.VisitWith[DekiScriptExpressionEvaluationState,Range] (IDekiScriptExpressionVisitor`2 visitor, DekiScriptExpressionEvaluationState state) [0x00000] in <filename unknown>:0
at MindTouch.Deki.Script.Compiler.DekiScriptExpressionEvaluation.Visit (MindTouch.Deki.Script.Expr.DekiScriptAssign expr, DekiScriptExpressionEvaluationState state) [0x00000] in <filename unknown>:0
at MindTouch.Deki.Script.Expr.DekiScriptAssign.VisitWith[DekiScriptExpressionEvaluationState,Range] (IDekiScriptExpressionVisitor`2 visitor, DekiScriptExpressionEvaluationState state) [0x00000] in <filename unknown>:0
at MindTouch.Deki.Script.Compiler.DekiScriptExpressionEvaluation.Visit (MindTouch.Deki.Script.Expr.DekiScriptDiscard expr, DekiScriptExpressionEvaluationState state) [0x00000] in <filename unknown>:0
at MindTouch.Deki.Script.Expr.DekiScriptDiscard.VisitWith[DekiScriptExpressionEvaluationState,Range] (IDekiScriptExpressionVisitor`2 visitor, DekiScriptExpressionEvaluationState state) [0x00000] in <filename unknown>:0
at MindTouch.Deki.Script.Compiler.DekiScriptExpressionEvaluation.Visit (MindTouch.Deki.Script.Expr.DekiScriptSequence expr, DekiScriptExpressionEvaluationState state) [0x00000] in <filename unknown>:0
at MindTouch.Deki.Script.Expr.DekiScriptSequence.VisitWith[DekiScriptExpressionEvaluationState,Range] (IDekiScriptExpressionVisitor`2 visitor, DekiScriptExpressionEvaluationState state) [0x00000] in <filename unknown>:0
at MindTouch.Deki.Script.Compiler.DekiScriptExpressionEvaluation.Visit (MindTouch.Deki.Script.Expr.DekiScriptReturnScope expr, DekiScriptExpressionEvaluationState state) [0x00000] in <filename unknown>:0
| Resources |
| Pfam ID: | DUF1488 | PDB: | 2gpi_A |
| Solved by: | JCSG | Priority Score: | 0 |
| HMMER: |
| # sequence matches: 386 | # architectures: 1 | # taxonomy ids:153 |
| FFAS: |
| Top FFAS hit in PDB: | "2gpiA, conserved hypothetical protein" | No significant hits in Pfam. | |
| GRDB: |
| Top significant hit (PDB90): | "2gpiA, structural genomics, unknown function ; crystal structure of conserved hypothetical protein (zp_00837230.1) from shewanella sp. pv-4 at 1.60 a resolution " |
| CATH: | CATH Domain | E-value | CATH Node |
| | 2gpiA00 | 1.20E-21 | 3.30.160.140
|
| PUBSERVER: |
| Publications(s) found: 6 |
| Publications(s) meeting filtering criteria: 0 |
| GeneSilico Metaserver: (Login and password: Jamboree) |
| PDBBLAST: PDB: 2gpi_A SCOP: d.354.1.1 |
| FFAS: PDB: 2gpi_A SCOP: d.354.1.1 |
| MGENTHREADER: PDB: 2gpi_A SCOP: d.354.1.1 |
| HHBLITS: PDB: 2gpi_A SCOP: d.354.1.1 |
| COMPASS: PDB: 2gpi_A SCOP: d.354.1.1 |
| CSBLAST: PDB: 2gpi_A SCOP: d.354.1.1 |
| HHSEARCH: PDB: 2gpi_A SCOP: d.354.1.1 |
| E.coli Annotations |
| NCBI: 16131161 | PORTECO PORAL: yrdB | GeneExpDB: b3280 |
Topsan Members
Tag pages as 'PF07369' to appear in this list.
| Name | Annotation | Author(s) |
| 2gpi
| The Shew_3726 gene of Shewanella sp. PV-4 encodes the first structural representative of protein family PF07369 (DUF1488). The structure reveals a left-handed beta-sheet wrapped around a central helix... | tinab (15 edits)
pascual (1 edits)
|
Summary
Pfam family
reference to undefined name 'note' Exception of type 'MindTouch.Deki.Script.Runtime.DekiScriptUndefinedNameException' was thrown. (click for details)Callstack:
at Groups/PF07369
MindTouch.Deki.Script.Runtime.DekiScriptUndefinedNameException: reference to undefined name 'note' Exception of type 'MindTouch.Deki.Script.Runtime.DekiScriptUndefinedNameException' was thrown.
at MindTouch.Deki.Script.Compiler.DekiScriptExpressionEvaluation.Visit (MindTouch.Deki.Script.Expr.DekiScriptVar expr, DekiScriptExpressionEvaluationState state) [0x00000] in <filename unknown>:0
at MindTouch.Deki.Script.Expr.DekiScriptVar.VisitWith[DekiScriptExpressionEvaluationState,Range] (IDekiScriptExpressionVisitor`2 visitor, DekiScriptExpressionEvaluationState state) [0x00000] in <filename unknown>:0
at MindTouch.Deki.Script.Compiler.DekiScriptExpressionEvaluation.Evaluate (MindTouch.Deki.Script.Expr.DekiScriptAccess expr, DekiScriptExpressionEvaluationState state, Boolean evaluateProperties) [0x00000] in <filename unknown>:0
at MindTouch.Deki.Script.Compiler.DekiScriptExpressionEvaluation.Visit (MindTouch.Deki.Script.Expr.DekiScriptAccess expr, DekiScriptExpressionEvaluationState state) [0x00000] in <filename unknown>:0
at MindTouch.Deki.Script.Expr.DekiScriptAccess.VisitWith[DekiScriptExpressionEvaluationState,Range] (IDekiScriptExpressionVisitor`2 visitor, DekiScriptExpressionEvaluationState state) [0x00000] in <filename unknown>:0
at MindTouch.Deki.Script.Compiler.DekiScriptExpressionEvaluation.Visit (MindTouch.Deki.Script.Expr.DekiScriptCall expr, DekiScriptExpressionEvaluationState state) [0x00000] in <filename unknown>:0
at MindTouch.Deki.Script.Expr.DekiScriptCall.VisitWith[DekiScriptExpressionEvaluationState,Range] (IDekiScriptExpressionVisitor`2 visitor, DekiScriptExpressionEvaluationState state) [0x00000] in <filename unknown>:0
at MindTouch.Deki.Script.Compiler.DekiScriptExpressionEvaluation.Visit (MindTouch.Deki.Script.Expr.DekiScriptReturnScope expr, DekiScriptExpressionEvaluationState state) [0x00000] in <filename unknown>:0 {Protein of unknown function (DUF1488) } with 154 members in NR database and additional 13 members in the metagenomic datasets is represented in Bacteria. The first structural representative solved (PDB Id:
reference to undefined name 'note' Exception of type 'MindTouch.Deki.Script.Runtime.DekiScriptUndefinedNameException' was thrown. (click for details)Callstack:
at Groups/PF07369
MindTouch.Deki.Script.Runtime.DekiScriptUndefinedNameException: reference to undefined name 'note' Exception of type 'MindTouch.Deki.Script.Runtime.DekiScriptUndefinedNameException' was thrown.
at MindTouch.Deki.Script.Compiler.DekiScriptExpressionEvaluation.Visit (MindTouch.Deki.Script.Expr.DekiScriptVar expr, DekiScriptExpressionEvaluationState state) [0x00000] in <filename unknown>:0
at MindTouch.Deki.Script.Expr.DekiScriptVar.VisitWith[DekiScriptExpressionEvaluationState,Range] (IDekiScriptExpressionVisitor`2 visitor, DekiScriptExpressionEvaluationState state) [0x00000] in <filename unknown>:0
at MindTouch.Deki.Script.Compiler.DekiScriptExpressionEvaluation.Evaluate (MindTouch.Deki.Script.Expr.DekiScriptAccess expr, DekiScriptExpressionEvaluationState state, Boolean evaluateProperties) [0x00000] in <filename unknown>:0
at MindTouch.Deki.Script.Compiler.DekiScriptExpressionEvaluation.Visit (MindTouch.Deki.Script.Expr.DekiScriptAccess expr, DekiScriptExpressionEvaluationState state) [0x00000] in <filename unknown>:0
at MindTouch.Deki.Script.Expr.DekiScriptAccess.VisitWith[DekiScriptExpressionEvaluationState,Range] (IDekiScriptExpressionVisitor`2 visitor, DekiScriptExpressionEvaluationState state) [0x00000] in <filename unknown>:0
at MindTouch.Deki.Script.Compiler.DekiScriptExpressionEvaluation.Visit (MindTouch.Deki.Script.Expr.DekiScriptCall expr, DekiScriptExpressionEvaluationState state) [0x00000] in <filename unknown>:0
at MindTouch.Deki.Script.Expr.DekiScriptCall.VisitWith[DekiScriptExpressionEvaluationState,Range] (IDekiScriptExpressionVisitor`2 visitor, DekiScriptExpressionEvaluationState state) [0x00000] in <filename unknown>:0
at MindTouch.Deki.Script.Compiler.DekiScriptExpressionEvaluation.Visit (MindTouch.Deki.Script.Expr.DekiScriptReturnScope expr, DekiScriptExpressionEvaluationState state) [0x00000] in <filename unknown>:0 ) was subject to FATCAT structural similarity search that indicated
similarity to SCOP (v. 1.73) domain
reference to undefined name 'note' Exception of type 'MindTouch.Deki.Script.Runtime.DekiScriptUndefinedNameException' was thrown. (click for details)Callstack:
at Groups/PF07369
MindTouch.Deki.Script.Runtime.DekiScriptUndefinedNameException: reference to undefined name 'note' Exception of type 'MindTouch.Deki.Script.Runtime.DekiScriptUndefinedNameException' was thrown.
at MindTouch.Deki.Script.Compiler.DekiScriptExpressionEvaluation.Visit (MindTouch.Deki.Script.Expr.DekiScriptVar expr, DekiScriptExpressionEvaluationState state) [0x00000] in <filename unknown>:0
at MindTouch.Deki.Script.Expr.DekiScriptVar.VisitWith[DekiScriptExpressionEvaluationState,Range] (IDekiScriptExpressionVisitor`2 visitor, DekiScriptExpressionEvaluationState state) [0x00000] in <filename unknown>:0
at MindTouch.Deki.Script.Compiler.DekiScriptExpressionEvaluation.Evaluate (MindTouch.Deki.Script.Expr.DekiScriptAccess expr, DekiScriptExpressionEvaluationState state, Boolean evaluateProperties) [0x00000] in <filename unknown>:0
at MindTouch.Deki.Script.Compiler.DekiScriptExpressionEvaluation.Visit (MindTouch.Deki.Script.Expr.DekiScriptAccess expr, DekiScriptExpressionEvaluationState state) [0x00000] in <filename unknown>:0
at MindTouch.Deki.Script.Expr.DekiScriptAccess.VisitWith[DekiScriptExpressionEvaluationState,Range] (IDekiScriptExpressionVisitor`2 visitor, DekiScriptExpressionEvaluationState state) [0x00000] in <filename unknown>:0
at MindTouch.Deki.Script.Compiler.DekiScriptExpressionEvaluation.Visit (MindTouch.Deki.Script.Expr.DekiScriptCall expr, DekiScriptExpressionEvaluationState state) [0x00000] in <filename unknown>:0
at MindTouch.Deki.Script.Expr.DekiScriptCall.VisitWith[DekiScriptExpressionEvaluationState,Range] (IDekiScriptExpressionVisitor`2 visitor, DekiScriptExpressionEvaluationState state) [0x00000] in <filename unknown>:0
at MindTouch.Deki.Script.Compiler.DekiScriptExpressionEvaluation.Visit (MindTouch.Deki.Script.Expr.DekiScriptReturnScope expr, DekiScriptExpressionEvaluationState state) [0x00000] in <filename unknown>:0 classified as Dsrbd-like fold. However, no sequence similarity to this fold has been detected.
