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The Open Protein Structure Annotation Network
PDB Keyword
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PF07237

    Table of contents
    1. 1. Topsan Members
    2. 2. Summary

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    Pfam ID: DUF1428 PDB: 2okq_A
    Solved by: MCSG Priority Score: 1.6
    Member of this family is in PDB.
    HMMER:
      # sequence matches: 184 # architectures: 5 # taxonomy ids:139
    FFAS:
      Top FFAS hit in PDB: "2okqA, Hypothetical protein ybaA" No significant hits in Pfam.
    GRDB:
      Top significant hit (PDB90): "2okqA, structural genomics, unknown function ; crystal structure of unknown conserved ybaa protein from shigella flexneri "
    CATH: CATH Domain E-value CATH Node
      2okqB00 2.00E-41 3.30.70.900
    PUBSERVER:
      Publications(s) found: 286
      Publications(s) meeting filtering criteria: 1
    GeneSilico Metaserver: (Login and password: Jamboree)
    FFAS: PDB: 2okq_A SCOP: predicted d.58.4.13
    PHYRE: PDB: 2okq_A SCOP: predicted d.58.4.13
    HHBLITS: PDB: 2okq_A SCOP: predicted d.58.4.13
    COMPASS: PDB: 2okq_A SCOP: predicted d.58.4.13
    COMA: PDB: 2okq_A SCOP: predicted d.58.4.13
    HHSEARCH: PDB: 2okq_A SCOP: predicted d.58.4.13
    E.coli Annotations
    NCBI: 16128440 PORTECO PORAL: ybaA GeneExpDB: b0456

    Topsan Members

    Tag pages as 'PF07237' to appear in this list.

    Name Annotation Author(s)
    2okq

    Summary

    Pfam family PFAM:PF07237 {Protein of unknown function (DUF1428) } with 97 members in NR database and additional 34 members in the metagenomic datasets is represented in Archaea, and Bacteria. The first structural representative solved (PDB Id: TOPSAN:2okq) was subject to FATCAT structural similarity search that indicated similarity to SCOP (v. 1.73) domain SCOP:d1iuja_ classified as Ferredoxin-like fold. Based on marginal prediction from FFAS confirmed by structural similarity one can argue that this family is remotely homologous to previously known structures from 'd1iuja_' this fold.

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